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Welcome to the Earlham Institute (EI) Genome Annotation Workshop 2026 wiki!

Test data download location:

Basic Unix Command Guide

Transcriptome assembly commands

Long‐read transcript assembly

Mikado commands

Reat transcriptome commands

Annotation liftover commands

Augustus commands

Tiberius commands

Helixer commands

GALBA commands

BRAKER3 commands

Minos commands

EVidenceModeler (EVM) commands

Annotation Web Apollo browser

Workshop data locations

Software tools used in the workshop

Guacamole tips

Troubleshooting