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Martin Ayling edited this page Sep 26, 2024
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Notes for pages that need to be fleshed out:
Browser based routes to access EI resources
- ood.hpc.nbi.ac.uk
- nbidropoff
- https://winrds.nbi.ac.uk/RDWeb/webclient/
sudo mount.cifs //nbi-hpc-data/HPC-Home/ /usr/users/ga002/aylingm/hpc-home/ -o domain=nr4,user=$(id -un),uid=$(id -u) sudo mount.cifs //nbi-hpc-data.ac.uk/HPC-Home/ /usr/users/ga002/aylingm/hpc-home/ -o domain=nr4,user=$(id -un),uid=$(id -u) sudo mount.cifs //ei-hpc-data.nbi.ac.uk/hpc-home/ /usr/users/ga002/aylingm/hpc-home/ -o domain=nr4,user=$(id -un),uid=$(id -u) sudo mount.cifs //ei-hpc-data.nbi.ac.uk/projects/ /usr/users/ga002/aylingm/projects/ -o domain=nr4,user=$(id -un),uid=$(id -u) sudo mount.cifs //ei-hpc-data.nbi.ac.uk/projects-scratch/ scratch/ -o domain=nr4,user=$(id -un),uid=$(id -u)
- Induction
- HPC Best practice
- Job Arrays - RC documentation
- Methods to Improve I/O Performance - RC documentation
- Customising your bash profile for ease and efficiency
- Customise bash profile: Logging Your Command History Automatically
- Using the ei-gpu partition on the Earlham Institute computing cluster
- Using the GPUs at EI
- HPC Job Summary Tool
- EI Cloud (CyVerse)
- Git and GitHub
- Worked examples
- Job Arrays
- Using Parabricks on the GPUs
- dependencies
- Software installations
- Workflow management system
- Transfers
- Local (mounting HPC storage)
- Remote - <1gb (ood)
- Remote - <50gb (nbi drop off)
- Remote - No limit (globus)
- mv command
- The nbi-download partition (retrieving external datasets)