Transcriptomic pipeline#26
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ens-ftricomi wants to merge 161 commits intofeature/transcriptomic_qc_metafrom
Open
Transcriptomic pipeline#26ens-ftricomi wants to merge 161 commits intofeature/transcriptomic_qc_metafrom
ens-ftricomi wants to merge 161 commits intofeature/transcriptomic_qc_metafrom
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Feature/nf pipeline1
…mbl-genes-metadata into feature/nf_pipeline
…n pipeline and the full alignment pipeline
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This pipeline processes transcriptomic data for various taxon IDs, performing a series of steps to fetch data, perform quality checks, subsample files, run alignments, and store the results of each step in a database.
It can handle taxon id with ~1000 samples, the strategy to handle more run accession is still in development