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Dev ensprod 8249 #10
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Dev ensprod 8249 #10
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4946239
Added models.py
dpopleton 64a40f8
Rearanged Models, added relationships, added taxonomy. NOT TESTED. Do…
dpopleton a4806f7
Added ensembly-py dependency, cleaned models
dpopleton a486862
Implemented Vinay's PR comments
dpopleton 018d5f5
Updated load_database for ORM
dpopleton e6d02d1
Converted Release adapter and Base adapter to ORM
dpopleton 87acb30
fetch_releases_for_genome converted to ORM
dpopleton 940ec63
fetch_releases_for_genome converted to ORM properly
dpopleton 72e86c5
fetch_releases_for_dataset converted to ORM
dpopleton 1c527c7
Added Tests
dpopleton 1cf9952
Added Tests
dpopleton 019c258
Added Tests, Refactored models.py, improved fetch_releases()
dpopleton a13387d
Fixed DB path to be located in the right place. Initially was created…
marcoooo 4b7c113
Removed 3.10 from the list, not targeted anyway for now.
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1 @@ | ||
| ensembl_metadata_api | ||
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
|
|
@@ -2,3 +2,5 @@ mysqlclient | |
| pymysql | ||
| sqlalchemy | ||
| types-pymysql | ||
| git+https://github.com/Ensembl/ensembl-py.git#egg=ensembl-py | ||
| mysql | ||
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,16 +1,66 @@ | ||
| # | ||
| # This file is autogenerated by pip-compile with python 3.8 | ||
| # This file is autogenerated by pip-compile with python 3.10 | ||
| # To update, run: | ||
| # | ||
| # pip-compile --output-file=requirements.txt requirements.in | ||
| # | ||
| attrs==22.1.0 | ||
| # via pytest | ||
| certifi==2022.9.24 | ||
| # via requests | ||
| charset-normalizer==2.1.1 | ||
| # via requests | ||
| ensembl-hive @ git+https://github.com/Ensembl/ensembl-hive.git@main | ||
| # via ensembl-py | ||
| ensembl-py @ git+https://github.com/Ensembl/ensembl-py.git | ||
| # via -r requirements.in | ||
| greenlet==1.1.0 | ||
| # via sqlalchemy | ||
| mysqlclient==2.0.3 | ||
| idna==3.4 | ||
| # via requests | ||
| iniconfig==1.1.1 | ||
| # via pytest | ||
| mysql==0.0.3 | ||
| # via -r requirements.in | ||
| mysqlclient==2.0.3 | ||
| # via | ||
| # -r requirements.in | ||
| # ensembl-py | ||
| # mysql | ||
| packaging==21.3 | ||
| # via pytest | ||
| pluggy==1.0.0 | ||
| # via pytest | ||
| py==1.11.0 | ||
| # via pytest | ||
| pymysql==1.0.2 | ||
| # via -r requirements.in | ||
| pyparsing==3.0.9 | ||
| # via packaging | ||
| pytest==7.1.3 | ||
| # via | ||
| # ensembl-py | ||
| # pytest-dependency | ||
| pytest-dependency==0.5.1 | ||
| # via ensembl-py | ||
| python-dotenv==0.19.2 | ||
| # via ensembl-py | ||
| pyyaml==6.0 | ||
| # via ensembl-py | ||
| requests==2.28.1 | ||
| # via ensembl-py | ||
| six==1.16.0 | ||
| # via sqlalchemy-utils | ||
| sqlalchemy==1.4.21 | ||
| # via -r requirements.in | ||
| # via | ||
| # -r requirements.in | ||
| # ensembl-py | ||
| # sqlalchemy-utils | ||
| sqlalchemy-utils==0.37.9 | ||
| # via ensembl-py | ||
| tomli==2.0.1 | ||
| # via pytest | ||
| types-pymysql==1.0.0 | ||
| # via -r requirements.in | ||
| urllib3==1.26.12 | ||
| # via requests |
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