Fix flat file genotype/population calculation

scripts/docs/data_files/vcf_species_list_113.json

@@ -0,0 +1,181 @@
+{
+   "bison_bison_bison" : {
+      "count" : "<span class=\"vdoc_var_count vdoc_thousand\" title=\"Over 19,000 variants\">19 K</span>",
+      "count_num" : 19748,
+      "name" : "American bison",
+      "label" : "Bison bison bison",
+      "EVA" : 5
+   },
+   "callithrix_jacchus" : {
+      "count" : "<span class=\"vdoc_var_count vdoc_million_1\" title=\"Over 14 million variants\">14 M</span>",
+      "count_num" : 14112349,
+      "name" : "White-tufted-ear marmoset",
+      "label" : "Callithrix jacchus",
+      "EVA" : 5
+   },
+   "sander_lucioperca" : {
+      "count" : "<span class=\"vdoc_var_count vdoc_thousand\" title=\"Over 975,000 variants\">975 K</span>",
+      "count_num" : 975373,
+      "name" : "Pike-perch",
+      "label" : "Sander lucioperca",
+      "EVA" : 5
+   },
+   "ficedula_albicollis" : {
+      "count" : "<span class=\"vdoc_var_count vdoc_thousand\" title=\"Over 37,000 variants\">37 K</span>",
+      "count_num" : 37728,
+      "name" : "Collared flycatcher",
+      "label" : "Ficedula albicollis",
+      "EVA" : 5
+   },
+   "macaca_mulatta" : {
+      "count" : "<span class=\"vdoc_var_count vdoc_million_1\" title=\"Over 50 million variants\">50 M</span>",
+      "count_num" : 50618586,
+      "name" : "Macaque",
+      "label" : "Macaca mulatta",
+      "EVA" : 5
+   },
+   "pan_troglodytes" : {
+      "count" : "<span class=\"vdoc_var_count vdoc_million_1\" title=\"Over 22 million variants\">22 M</span>",
+      "count_num" : 22851915,
+      "name" : "Chimpanzee",
+      "label" : "Pan troglodytes",
+      "EVA" : 5
+   },
+   "coturnix_japonica" : {
+      "count" : "<span class=\"vdoc_var_count vdoc_thousand\" title=\"Over 8,000 variants\">8 K</span>",
+      "count_num" : 8668,
+      "name" : "Japanese quail",
+      "label" : "Coturnix japonica",
+      "EVA" : 5
+   },
+   "bos_grunniens" : {
+      "count" : "<span class=\"vdoc_var_count vdoc_thousand\" title=\"Over 64,000 variants\">64 K</span>",
+      "count_num" : 64648,
+      "name" : "Domestic yak",
+      "label" : "Bos grunniens",
+      "EVA" : 5
+   },
+   "anas_platyrhynchos" : {
+      "count" : "<span class=\"vdoc_var_count vdoc_million_1\" title=\"Over 29 million variants\">29 M</span>",
+      "count_num" : 337418,
+      "name" : "Mallard",
+      "label" : "Anas platyrhynchos",
+      "EVA" : 5
+   },
+   "macaca_fascicularis" : {
+      "count" : "<span class=\"vdoc_var_count vdoc_million_2\" title=\"Over 1.6 million variants\">1.6 M</span>",
+      "count_num" : 1602562,
+      "name" : "Crab-eating macaque",
+      "label" : "Macaca fascicularis",
+      "EVA" : 5
+   },
+   "oreochromis_niloticus" : {
+      "count" : "<span class=\"vdoc_var_count vdoc_thousand\" title=\"Over 63,000 variants\">63 K</span>",
+      "count_num" : 63731,
+      "name" : "Nile tilapia",
+      "label" : "Oreochromis niloticus",
+      "EVA" : 5
+   },
+   "oncorhynchus_mykiss" : {
+      "count" : "<span class=\"vdoc_var_count vdoc_thousand\" title=\"Over 33,000 variants\">33 K</span>",
+      "count_num" : 33871,
+      "name" : "Rainbow trout",
+      "label" : "Oncorhynchus mykiss",
+      "EVA" : 5
+   },
+   "cavia_porcellus" : {
+      "count" : "<span class=\"vdoc_var_count vdoc_thousand\" title=\"Over 844,000 variants\">844 K</span>",
+      "count_num" : 844442,
+      "name" : "Guinea Pig",
+      "label" : "Cavia porcellus",
+      "EVA" : 5
+   },
+   "taeniopygia_guttata" : {
+      "count" : "<span class=\"vdoc_var_count vdoc_million_2\" title=\"Over 1.5 million variants\">1.5 M</span>",
+      "count_num" : 1568534,
+      "name" : "Zebra finch",
+      "label" : "Taeniopygia guttata",
+      "EVA" : 5
+   },
+   "meleagris_gallopavo" : {
+      "count" : "<span class=\"vdoc_var_count vdoc_thousand\" title=\"Over 5,000 variants\">5 K</span>",
+      "count_num" : 5729,
+      "name" : "Turkey",
+      "label" : "Meleagris gallopavo",
+      "EVA" : 5
+   },
+   "seriola_dumerili" : {
+      "count" : "<span class=\"vdoc_var_count vdoc_million_2\" title=\"Over 9 million variants\">9 M</span>",
+      "count_num" : 9094931,
+      "name" : "Greater amberjack",
+      "label" : "Seriola dumerili",
+      "EVA" : 5
+   },
+   "salmo_salar" : {
+      "count" : "<span class=\"vdoc_var_count vdoc_million_1\" title=\"Over 15 million variants\">15 M</span>",
+      "count_num" : 15298711,
+      "name" : "Atlantic salmon",
+      "label" : "Salmo salar",
+      "genotype" : 1,
+      "EVA" : 5
+   },
+   "neovison_vison" : {
+      "count" : "<span class=\"vdoc_var_count vdoc_thousand\" title=\"Over 34,000 variants\">34 K</span>",
+      "count_num" : 34816,
+      "name" : "American mink",
+      "label" : "Neovison vison",
+      "EVA" : 5
+   },
+   "microtus_ochrogaster" : {
+      "count" : "<span class=\"vdoc_var_count vdoc_thousand\" title=\"Over 8,000 variants\">8 K</span>",
+      "count_num" : 8166,
+      "name" : "Prairie vole",
+      "label" : "Microtus ochrogaster",
+      "EVA" : 5
+   },
+   "pongo_abelii" : {
+      "count" : "<span class=\"vdoc_var_count vdoc_million_2\" title=\"Over 9.5 million variants\">9.5 M</span>",
+      "count_num" : 9587649,
+      "name" : "Sumatran orangutan",
+      "label" : "Pongo abelii",
+      "EVA" : 5
+   },
+   "nomascus_leucogenys" : {
+      "count" : "<span class=\"vdoc_var_count vdoc_million_2\" title=\"Over 1.1 million variants\">1.1 M</span>",
+      "count_num" : 1114820,
+      "name" : "Gibbon",
+      "label" : "Nomascus leucogenys",
+      "EVA" : 5
+   },
+   "chlorocebus_sabaeus" : {
+      "count" : "<span class=\"vdoc_var_count vdoc_million_1\" title=\"Over 67 million variants\">67 M</span>",
+      "count_num" : 67673192,
+      "name" : "Vervet-AGM",
+      "label" : "Chlorocebus sabaeus",
+      "genotype" : 1,
+      "EVA" : 5
+   },
+   "dicentrarchus_labrax" : {
+      "count" : "<span class=\"vdoc_var_count vdoc_thousand\" title=\"Over 37,000 variants\">37 K</span>",
+      "count_num" : 37125,
+      "name" : "European seabass",
+      "label" : "Dicentrarchus labrax",
+      "EVA" : 5
+   },
+   "parus_major" : {
+      "count" : "<span class=\"vdoc_var_count vdoc_thousand\" title=\"Over 497,000 variants\">497 K</span>",
+      "count_num" : 498441,
+      "name" : "Great Tit",
+      "genotype" : 1,
+      "label" : "Parus major",
+      "EVA" : 5
+   },
+   "oryctolagus_cuniculus" : {
+      "count" : "<span class=\"vdoc_var_count vdoc_thousand\" title=\"Over 83,000 variants\">83 K</span>",
+      "count_num": 83331,
+      "name" : "Rabbit",
+      "label" : "Oryctolagus cuniculus",
+      "genotype" : 1,
+      "EVA" : 5
+   }
+}