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Updates/cleanup#34

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veidenberg merged 5 commits intomainfrom
rel5
Mar 25, 2025
Merged

Updates/cleanup#34
veidenberg merged 5 commits intomainfrom
rel5

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@veidenberg veidenberg commented Feb 11, 2025

Description

Update the track loader script and do some cleanup.

Track loader:

  • integrate utility script to fetch track descritions from database on runtime
  • add --release and --env command-line params
  • refactoring, remove obsolete code and params

Maintenance:

  • remove olds scripts and csv files, simplify script names
  • update readmes, srcipt help text, comments, track loading SOP
  • add python requirements for utility scripts

Knowledge Base

SOP for track loading: https://www.ebi.ac.uk/panda/jira/browse/ENSWEBSOPS-171

Example(s)

./submit_tracks.py --release 5 --env dev #load all tracks for beta-5 release to dev Track API

@veidenberg veidenberg marked this pull request as ready for review March 13, 2025 12:10
@@ -272,29 +313,29 @@ def apply_template(genome_id: str, template_name: str, datafile: str = "") -> No
track_data["datafiles"][key] = f"{nameroot}-summary.bw"

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2 participants