Create chromosomes-scaffolds-contigs.md#46
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amushtaq102 wants to merge 2 commits intoamushtaq102-patch-1from
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Create chromosomes-scaffolds-contigs.md#46amushtaq102 wants to merge 2 commits intoamushtaq102-patch-1from
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azangru
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docs/about-ensembl/annotation-and-prediction/chromosomes-scaffolds-contigs.md
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| Although, the chromosome within which the scaffold occurs is known, the scaffold's position or orientation is not known. | ||
| # Unplaced scaffolds | ||
| It is not known which chromosome the scaffold belongs to. | ||
| The relationship between contigs, scaffolds and chromosomes is defined in AGP files. These files describe how assembled sequences (eg chromosomes) are compiled from their components (eg scaffolds). In Ensembl, we import contig-level DNA sequence into our core databases. We also import the AGP files for contig-to-scaffold, contig-to-chromosome, and scaffold-to-chromosome mappings. This allows us to generate scaffold and chromosome sequence on the fly by stitching the contigs sequences together as specified by the AGP files. |
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Not sure if you wanted this line (starting from "The relationship") to appear in its own paragraph; but if you did, you would need to leave an empty line before it. Lines that are following one after the other without an empty line in between in markdown are collapsed into a single paragraph in html.
ens-ap5
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Sep 7, 2022
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I agree with Andrey's comments - the headings should be demoted to ## and paragraph spacing fixed.
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Hi @ens-ap5
I have created a file for the TOC to match.