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luanbroo merged 4 commits into from
Aug 1, 2024
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edits-1 #77

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Merge branch 'main' into homology-edits
luanbroo Aug 1, 2024
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24 changes: 13 additions & 11 deletions docs/ensembl-help/using-ensembl/ensembl-apps/entity-viewer/gene-homology.md
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Expand Up @@ -2,6 +2,8 @@
slug: gene-homology
title: How to find homologous genes in the Entity viewer
description: A table of the homologous genes found in other species for an individual gene of interest.
related_articles:
- href: ../../../ensembl-data/annotation-and-prediction/homology-annotation.md
---

# How to find homologous genes in the Entity viewer
Expand All @@ -19,23 +21,23 @@ The homology table for a gene is the first tab in the gene relationship panel fo
</figcaption>
</figure>

For each gene homologue found in another species genome the following information is provided:
For each homologous gene found in another species genome the following information is provided:

* Common name: Domestic guinea pig
* Scientific name: Cavia porcellus
* % protein similarity: The percentage of identical amino acid residues aligned against each other.
* % coverage: The percent of query which is in local alignment with the respective reference.
* Gene symbol: Gene symbol for homologues in each species - these may vary between species .
* Gene ID: the Ensembl ID - ENSG eg ENSCPOG00000005153.4.
* Hit type: The type of homology: RBBH: reciprocal best blast hit, BBH: best blast hit.
* Assembly: Genome assembly.
* __Common name__: Domestic guinea pig
* __Scientific name__: _Cavia porcellus_
* __% Protein similarity__: The percentage of identical amino acid residues aligned against each other.
* __% Coverage__: The percent of query which is in local alignment with the respective reference.
* __Gene symbol__: Gene symbol for homologues in each species - these may vary between species .
* __Gene ID__: the Ensembl ID - ENSG eg ENSCPOG00000005153.4.
* __Hit type__: The type of homology: RBBH: reciprocal best blast hit, BBH: best blast hit.
* __Assembly__: Genome assembly.

### Customising the table

You can reorder the table by sorting on a specific column. To sort the content of a column click on the arrow next to the column heading.

Sorting a specific column will in turn reorganise the information in all other columns of the table.

You can also customise the table by hiding unwanted rows and columns by selecting the appropriate option in the Action dropdown at the top left of the homology table.
You can also customise the table by hiding unwanted rows and columns by selecting the appropriate option in the Actions dropdown at the top left of the homology table.

You can download both a customised or uncustomised version of the table selecting the download option in the Action dropdown.
You can download both a customised or uncustomised version of the table selecting the download option in the Actions dropdown.