v0.3.0

Per-pixel fitting can be run from QuPath, and the lifetime maps arrive in the project as one image with a channel per map in nanoseconds. Annotations get a mean and a median per map.

Tail fits are selectable, the advanced fit settings are reachable, and the dialog's number fields take typing.

tile_fit is the default pipeline, per-pixel fits use the GPU, and the decode cap scales with the machine rather than sitting at 2 GiB.

QuPath warns when the extension and the bridge are different versions, and survives a bridge restart without needing Connect again.

See the README for the endpoints.

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Two halves, one on each side.

The Python half comes from PyPI, into the environment FLIMKit runs in:

pip install flimkit-qupath-bridge

That pulls FLIMKit with it. The bridge then starts with FLIMKit and adds a Send to QuPath button to the ROI panel. flimkit-bridge is on the path as well, for the server without the FLIMKit window.

The wheel and sdist are attached below for anyone installing offline, or into ~/.flimkit/plugins/.

QuPath extension: drop qupath-extension-flimkit-bridge-*.jar into QuPath's extensions directory, normally ~/QuPath/v0.7/extensions. It appears under Extensions > FLIMKit bridge.

Co-registration needs the QuPath alignment extension, which QuPath does not ship. Without it you can still exchange images and ROIs, but only between images that already share a coordinate system.

Requires QuPath 0.7.0 or newer, Python 3.12 or newer, and FLIMKit 0.12.0 or newer.