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Fixes the pixel counts in the phasor window.
QuPath extension: drop qupath-extension-flimkit-bridge-0.6.1.jar into QuPath's extensions directory, normally ~/QuPath/v0.7/extensions, replacing the 0.6.0 jar, or update it from Extensions > Manage extensions if you added the catalog. The server side is unchanged: pip install flimkit-bridge.
What changes
- Phasor cursors count the pixels the plot shows. The window drew every pixel with a mean of 0.01 photons per bin, then asked for cursor counts at 1.0, so on a typical image almost nothing inside a cursor was counted. On a 1024 x 1024 PTU at binning 4, a cursor on the densest part of the cloud reported 43 px where it now reports 10,854, and one on a visibly populated area went from 0 to 543. The window no longer sends a floor, so the counts, the lifetimes they report and the annotations Create annotations makes all use the plot's own.
Requires QuPath 0.7.0 or newer and FLIMKit 0.13.0 or newer.