v0.4.0

Direct image and ROI exchange between FLIMKit and Fiji.

Two things to install. The server, which the QuPath extension shares:

pip install flimkit-bridge

And the jar below, dropped into your Fiji plugins directory. Fiji 2.16 or newer, with its bundled JDK 21.

Nine commands appear under Plugins > FLIMKit, and File > Open handles .ptu, .sdt, .photons and the other formats FLIMKit reads.

v0.3.1

Direct image and ROI exchange between FLIMKit and Fiji.

Two things to install. The server, which the QuPath extension shares:

pip install flimkit-bridge

And the jar below, dropped into your Fiji plugins directory. Fiji 2.16 or newer, with its bundled JDK 21.

Nine commands appear under Plugins > FLIMKit, and File > Open handles .ptu, .sdt, .photons and the other formats FLIMKit reads.

v0.3.0

Direct image and ROI exchange between FLIMKit and Fiji.

Two things to install. The server, which the QuPath extension shares:

pip install flimkit-bridge

And the jar below, dropped into your Fiji plugins directory. Fiji 2.16 or newer, with its bundled JDK 21.

Nine commands appear under Plugins > FLIMKit, and File > Open handles .ptu, .sdt, .photons and the other formats FLIMKit reads.

v0.2.0

Direct image and ROI exchange between FLIMKit and Fiji.

Two things to install. The server, which the QuPath extension shares:

pip install flimkit-bridge

And the jar below, dropped into your Fiji plugins directory. Fiji 2.16 or newer, with its bundled JDK 21.

Nine commands appear under Plugins > FLIMKit, and File > Open handles .ptu, .sdt, .photons and the other formats FLIMKit reads.

v0.1.0

First release of the FLIMKit to Fiji bridge.

Direct localhost HTTP exchange between FLIMKit and Fiji. FLIMKit sends the fitted lifetime and photon-count intensity maps as float32 TIFF with their units, and ROIs move in both directions as GeoJSON. Co-registration is handled on the Fiji side.

Requires FLIMKit 0.10.1 or newer for the plugin bindings, and a Fiji running Java 11 or newer.