1.0.0 Alpha PyPI Release

What's Changed

• Rearranging Dockerfile -- adding seqtk package by @cansavvy in #1
• bam to counts conversion by @cansavvy in #4
• Alignment with bowtie2 by @cansavvy in #6
• Testing dependencies in Docker by @marissafujimoto in #3
• Python implementation of pgMAP by @marissafujimoto in #11
• Set up CI/CD and docs by @cansavvy in #16
• Add python CLI by @marissafujimoto in #14
• Update requirements.txt by @cansavvy in #17
• Single threaded optimization by @marissafujimoto in #15
• Support gRNA1 error tolerance by @marissafujimoto in #18
• Install cli as part of setup by @marissafujimoto in #20
• Implement custom trim strategies by @marissafujimoto in #21
• Clarify default error tolerances in CLI by @marissafujimoto in #24
• Delete unused files by @marissafujimoto in #23
• Get package ready for build and add configuration by @marissafujimoto in #22
• Add draft installation and usage instructions by @marissafujimoto in #19
• Add example docs in depth guide by @marissafujimoto in #25

New Contributors

• @cansavvy made their first contribution in #1
• @marissafujimoto made their first contribution in #3

Full Changelog: https://github.com/FredHutch/pgmap/commits/v0.0.1-alpha