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@mrtamm mrtamm released this 30 Dec 16:28
v0.9.0
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Learn about vigilant mode.

Initial version to demonstrate a FAIR Data Point, aggregated Beacon, and sensitive Beacon in a single app solution. This is an early release that aims to match the current API specification but is not yet 100% compliant nor verified. This release is considered stable for early evaluation and testing.

Associated Docker images are published on GitHub packages.

Features

FAIR Data Point

  • FAIR Data Point v1.2, GDI metadata v1.1
  • configurable properties, templates, and dataset-metadata files.
  • initial templates for FAIRDataPoint, MetadataService, Catalog, Dataset
    (including Distribution).

Aggregated Beacon

  • Beacon API specification v2.2
  • POST /g_variants – allele frequencies per cohort
  • POST /datasets – list of available datasets
  • data from {DATASET_ID}/{ASSEMBLY_ID}/allele-freq-chr*.parquet files
  • configurable metadata and security (including OIDC, GA4GH Passport & Visas)

Sensitive Beacon

  • Beacon API specification v2.2
  • POST /individuals – for counting individuals
  • data from {DATASET_ID}/{ASSEMBLY_ID}/individuals-chr*.parquet files
  • configurable metadata and security (including OIDC, GA4GH Passport & Visas)

General

  • Landing page that reflects the current state of data in the app instance.
  • GET /health endpoint for health-checks.
  • Optional Basic authentication for the landing page.
  • Optional data-syncing from an S3 storage.
  • Inspection of data-directory for dataset metadata and Beacon Parquet files.
  • Optional data syncing from an S3 storage into the local data directory.
  • Discovered dataset details are stored in memory for quick access.
  • README instructions to start with deployment.
  • Initial CONTRIBUTING guide.
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