v1.2.0
This minor release expands the qualification / workflow test suite, refreshes packaged example datasets, and updates release/CI/docs scaffolding.
Changes:
- Add qualification helpers + multiple new qualification tests and custom YAML workflows under
tests/testthat/. - Refresh packaged data objects (
data/*.rda) and their docs/snapshots to match regenerated CSV sources. - Bump package version to 1.2.0 and update release tooling/docs/CI configuration.
What's Changed
- Main -> Dev by Laura Maxwell (@lauramaxwell) in #110
- Update r-releaser workflow by Natalia Andriychuk (@nandriychuk) in #120
- Migrate qualification tests from gsm.kri by Laura Maxwell (@lauramaxwell) in #117
- Update Readme to reflect current qualification process by Natalia Andriychuk (@nandriychuk) in #124
- Main -> dev by Laura Maxwell (@lauramaxwell) in #127
- Set up AI and qcthat by Jon Harmon (@jonthegeek) in #125
- Update lSource with new domains for the Premature Death KRI by Laura Maxwell (@lauramaxwell) in #132
- Update contributor guidelines by Laura Maxwell (@lauramaxwell) in #133
- update Flag() to capture negative flags properly and add tests by Laura Maxwell (@lauramaxwell) in #136
- Gsm.core v1.2.0 rc by Laura Maxwell (@lauramaxwell) in #134
Full Changelog: v1.1.8...v1.2.0
{qcthat} Reports
Milestone
✅ A qcthat issue test matrix with 1 milestone, 2 issues, and 9 tests
└─█─Milestone: v1.2.0 (2 issues, 9 tests)
├─☑️─Bug 135: Negative flags aren't assigned correctly when `Score==Threshold`.
│ ├─✅─errors working as expected (#135)
│ └─✅─Flag correctly handles exact cut point values at negative and positive thresholds (#135)
└─☑️─Technical Task 116: Migrate appropriate qualification tests to gsm.core
├─✅─Qual: Given raw participant-level data, a properly specified Workflow for a KRI creates summarized and flagged data (#116)
├─✅─Qual: Given raw participant-level data with missingness,
a properly specified Workflow for a KRI creates summarized and flagged data (#116)
├─✅─Qual: Given pre-processed input data, a properly specified Workflow for a KRI creates summarized and flagged data (#116)
├─✅─Qual: Given appropriate metadata (i.e. vThresholds), flagged observations are properly marked in summary data (#116)
├─✅─Qual: Given appropriate metadata (i.e. vThresholds), bounds are properly applied to generate flags (#116)
├─✅─Qual: Given appropriate raw participant-level data, flag values can be correctly assigned to records that meet flagging criteria, including custom thresholding (#116)
└─✅─Qual: Given appropriate raw participant-level data, flag values are correctly assigned as NA for sites with low enrollment (#116)
# Issue state: 📥 = open, ☑️ = closed (completed), ⛔ = closed (won't fix)
# Test disposition: ✅ = passed, ❌ = failed, 🚫 = skipped
🟢 All issues have at least one test
🙈 6 issues with label "qcthat-nocov" were ignored
Completed Issues
✅ A qcthat issue test matrix with 5 milestones, 14 issues, and 20 tests
├─█─Milestone: v1.1.1 (4 issues, 6 tests)
│ ├─☑️─Issue 31: Feature/Bug - allow no params in workflow steps
│ │ └─✅─RunStep will run a function with no parameters (#31)
│ ├─☑️─Issue 23: Bugfix: Message out of `RunStep` related to vector arguments should not be vectorized.
│ │ └─✅─Passes direct value vector parameters correctly (#23)
│ ├─☑️─Issue 22: Feature: DATETIME data type
│ │ ├─✅─RunQuery applies schema appropriately (#22, #45)
│ │ └─✅─Validate column type works (#22)
│ └─☑️─Issue 21: QC: Warnings in Tests
│ ├─✅─Analyze_NormalApprox_PredictBounds processes data correctly (#21)
│ └─✅─rate output created as expected and has correct structure (#21)
├─█─Milestone: v1.1.2 (1 issue, 1 test)
│ └─☑️─Issue 28: Business Requirement: Update Accrual Thresholds for existing KRIs
│ └─✅─Function correctly applies accrual threshold (#7, #28)
├─█─Milestone: v1.1.4 (2 issues, 1 test)
│ ├─☑️─Bug 71: Bugfix: `RunQuery()` coerces undefined columns to `character`
│ │ └─✅─RunQuery applies incomplete schema appropriately (#70, #71)
│ └─☑️─Requirement 70: Business Requirement: Update `RunQuery` to not set `character` type if not specified
│ └─✅─RunQuery applies incomplete schema appropriately (#70, #71)
├─█─Milestone: v1.1.5 (1 issue, 1 test)
│ └─☑️─Technical Task 77: Add `RiskScoreWeight` info to `Analysis_Flagged` via the `Flag()` function
│ └─✅─Flag function adds RiskScoreWeight info to Analysis_Flagged (#77)
├─█─Milestone: v1.2.0 (2 issues, 9 tests)
│ ├─☑️─Bug 135: Negative flags aren't assigned correctly when `Score==Threshold`.
│ │ ├─✅─errors working as expected (#135)
│ │ └─✅─Flag correctly handles exact cut point values at negative and positive thresholds (#135)
│ └─☑️─Technical Task 116: Migrate appropriate qualification tests to gsm.core
│ ├─✅─Qual: Given raw participant-level data, a properly specified Workflow for a KRI creates summarized and flagged data (#116)
│ ├─✅─Qual: Given raw participant-level data with missingness,
a properly specified Workflow for a KRI creates summarized and flagged data (#116)
│ ├─✅─Qual: Given pre-processed input data, a properly specified Workflow for a KRI creates summarized and flagged data (#116)
│ ├─✅─Qual: Given appropriate metadata (i.e. vThresholds), flagged observations are properly marked in summary data (#116)
│ ├─✅─Qual: Given appropriate metadata (i.e. vThresholds), bounds are properly applied to generate flags (#116)
│ ├─✅─Qual: Given appropriate raw participant-level data, flag values can be correctly assigned to records that meet flagging criteria, including custom thresholding (#116)
│ └─✅─Qual: Given appropriate raw participant-level data, flag values are correctly assigned as NA for sites with low enrollment (#116)
└─█─Milestone: <none> (4 issues, 4 tests)
├─☑️─Issue 45: Feature: Support `logical` data type.
│ └─✅─RunQuery applies schema appropriately (#22, #45)
├─☑️─Issue 44: Bugfix: `RunQuery` throws an error on empty `Date` strings.
│ └─✅─RunQuery parses invalid date/times correctly (#44)
├─☑️─Technical Task 43: `MakeWorkflowList` doesn't work with packages that aren't installed.
│ └─✅─invalid data returns list NULL elements (#43)
└─☑️─Issue 7: Add generalized Accrual Threshold to Flag()
└─✅─Function correctly applies accrual threshold (#7, #28)
# Issue state: 📥 = open, ☑️ = closed (completed), ⛔ = closed (won't fix)
# Test disposition: ✅ = passed, ❌ = failed, 🚫 = skipped
🟢 All issues have at least one test
🙈 25 issues with label "qcthat-nocov" were ignored
This report was generated by this GitHub Actions run.
Last updated: 2026-04-15 16:31:33 UTC
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