Skip to content

v1.1.4

Choose a tag to compare

@lauramaxwell lauramaxwell released this 17 Apr 19:26
3275e90

This patch release primarily focuses on tightening quality control (new qualitative tests + qcthat automation) and aligning docs/dependencies with the RC versions of upstream gsm.* packages.

Changes:

  • Add qualitative test helpers + new qual test cases (T15.1 / T15.2) for reporting outputs and deltas.
  • Add qcthat GitHub Action workflow and repo guidance docs (agents + documentation skill).

What's Changed

New Contributors

Full Changelog: v1.1.3...v1.1.4

{qcthat} Reports

Milestone

✅ A qcthat issue test matrix with 1 milestone, 1 issue, and 2 tests
└─█─Milestone: v1.1.4 (1 issue, 2 tests)
  └─☑️─Technical Task 50: Migrate appropriate qualification tests to gsm.reporting
    ├─✅─Qual: Given summarized analytics data, a properly specified reporting workflow creates cross-sectional results data set with one record per metric per group  (#50)
    └─✅─Qual: Given summarized analytics data and historical reporting results data, a properly specified reporting workflow creates cross-sectional results data set including changes from previous snapshot with one record per metric per group (#6, #30, #31, #35, #50)
# Issue state: 📥 = open, ☑️ = closed (completed), ⛔ = closed (won't fix)
# Test disposition: ✅ = passed, ❌ = failed, 🚫 = skipped
✅ All tests passed

🟢 All issues have at least one test

🙈 1 issue with label "qcthat-nocov" was ignored


Completed Issues

✅ A qcthat issue test matrix with 2 milestones, 8 issues, and 10 tests
├─█─Milestone: v1.1.0 (3 issues, 3 tests)
│ ├─☑️─Issue 35: Feature: rename results$prevSnapshotDate to results$SnapshotDate_Previous
│ │ ├─✅─[ CalculateChange ] correctly calculates change from the previous snapshot. (#6, #30, #31, #35)
│ │ └─✅─Qual: Given summarized analytics data and historical reporting results data, a properly specified reporting workflow creates cross-sectional results data set including changes from previous snapshot with one record per metric per group (#6, #30, #31, #35, #50)
│ ├─☑️─Issue 31: Feature: Add attribute deltas to `dfResults`
│ │ ├─✅─[ CalculateChange ] correctly calculates change from the previous snapshot. (#6, #30, #31, #35)
│ │ ├─✅─[ CalculateChange ] returns message and dfResults unchanged if dfPrevious not supplied. (#31, #30)
│ │ └─✅─Qual: Given summarized analytics data and historical reporting results data, a properly specified reporting workflow creates cross-sectional results data set including changes from previous snapshot with one record per metric per group (#6, #30, #31, #35, #50)
│ └─☑️─Requirement 30: Business Requirement: Add deltas in risk signal logic
│   ├─✅─[ CalculateChange ] correctly calculates change from the previous snapshot. (#6, #30, #31, #35)
│   ├─✅─[ CalculateChange ] returns message and dfResults unchanged if dfPrevious not supplied. (#31, #30)
│   └─✅─Qual: Given summarized analytics data and historical reporting results data, a properly specified reporting workflow creates cross-sectional results data set including changes from previous snapshot with one record per metric per group (#6, #30, #31, #35, #50)
├─█─Milestone: v1.1.4 (1 issue, 2 tests)
│ └─☑️─Technical Task 50: Migrate appropriate qualification tests to gsm.reporting
│   ├─✅─Qual: Given summarized analytics data, a properly specified reporting workflow creates cross-sectional results data set with one record per metric per group  (#50)
│   └─✅─Qual: Given summarized analytics data and historical reporting results data, a properly specified reporting workflow creates cross-sectional results data set including changes from previous snapshot with one record per metric per group (#6, #30, #31, #35, #50)
└─█─Milestone: <none> (4 issues, 8 tests)
  ├─☑️─Issue 41: QC: update makebounds test snapshot with new gsm.core data
  │ ├─✅─MakeBounds makes dfBounds (#41, #42)
  │ ├─✅─MakeBounds uses user-supplied strMetrics (#41)
  │ └─✅─MakeBounds makes poisson dfBounds (#41)
  ├─☑️─Issue 25: Bugfix: `MakeBounds` should exit gracefully if a mismatch between metric IDs in `results` and `metrics` is detected.
  │ └─✅─MakeBounds has appropriate expected warnings (#25)
  ├─☑️─Issue 24: Feature: `BindResults()` in its preexisting workflow yaml does not have a parameter for SnapshotDate
  │ ├─✅─BindResults binds dfs in lAnalysis (#24)
  │ └─✅─BindResults binds dfs in lAnalysis$lData (#24)
  └─☑️─Issue 6: Add change from previous snapshot.
    ├─✅─[ CalculateChange ] correctly calculates change from the previous snapshot. (#6, #30, #31, #35)
    └─✅─Qual: Given summarized analytics data and historical reporting results data, a properly specified reporting workflow creates cross-sectional results data set including changes from previous snapshot with one record per metric per group (#6, #30, #31, #35, #50)
# Issue state: 📥 = open, ☑️ = closed (completed), ⛔ = closed (won't fix)
# Test disposition: ✅ = passed, ❌ = failed, 🚫 = skipped
✅ All tests passed

🟢 All issues have at least one test

🙈 12 issues with label "qcthat-nocov" were ignored


This report was generated by this GitHub Actions run.

Last updated: 2026-04-17 19:32:03 UTC

Session Info ─ Session info ───────────────────────────────────────────────────────────────

setting value

version R version 4.5.3 (2026-03-11)

os Ubuntu 24.04.4 LTS

system x86_64, linux-gnu

ui X11

language (EN)

collate C.UTF-8

ctype C.UTF-8

tz UTC

date 2026-04-17

pandoc 3.1.3 @ /usr/bin/pandoc

quarto NA

─ Packages ───────────────────────────────────────────────────────────────────

package * version date (UTC) lib source

askpass 1.2.1 2024-10-04 [1] RSPM

astgrepr 0.1.1 2025-06-07 [1] RSPM

backports 1.5.1 2026-04-03 [1] RSPM

base * 4.5.3 2026-03-11 [3] local

base64enc 0.1-6 2026-02-02 [1] RSPM

bigD 0.3.1 2025-04-03 [1] RSPM

bitops 1.0-9 2024-10-03 [1] RSPM

blob 1.3.0 2026-01-14 [1] RSPM

boot 1.3-32 2025-08-29 [3] CRAN (R 4.5.3)

brio 1.1.5 2024-04-24 [1] RSPM

bslib 0.10.0 2026-01-26 [1] RSPM

cachem 1.1.0 2024-05-16 [1] RSPM

callr 3.7.6 2024-03-25 [1] RSPM

checkmate 2.3.4 2026-02-03 [1] RSPM

class 7.3-23 2025-01-01 [3] CRAN (R 4.5.3)

cli 3.6.6 2026-04-09 [1] RSPM

clipr 0.8.0 2022-02-22 [1] RSPM

cluster 2.1.8.2 2026-02-05 [3] CRAN (R 4.5.3)

codetools 0.2-20 2024-03-31 [3] CRAN (R 4.5.3)

commonmark 2.0.0 2025-07-07 [1] RSPM

compiler 4.5.3 2026-03-11 [3] local

covr 3.6.5 2025-11-09 [1] RSPM

crayon 1.5.3 2024-06-20 [1] RSPM

credentials 2.0.3 2025-09-12 [1] RSPM

crosstalk 1.2.2 2025-08-26 [1] RSPM

curl 7.0.0 2025-08-19 [1] RSPM

datasets * 4.5.3 2026-03-11 [3] local

DBI 1.3.0 2026-02-25 [1] RSPM

dbplyr 2.5.2 2026-02-13 [1] RSPM

desc 1.4.3 2023-12-10 [1] RSPM

diffobj 0.3.6 2025-04-21 [1] RSPM

digest 0.6.39 2025-11-19 [1] RSPM

dplyr 1.2.1 2026-04-03 [1] RSPM

DT 0.34.0 2025-09-02 [1] RSPM

duckdb 1.5.2 2026-04-13 [1] RSPM

emoji 16.0.0 2024-10-28 [1] RSPM

evaluate 1.0.5 2025-08-27 [1] RSPM

farver 2.1.2 2024-05-13 [1] RSPM

fastmap 1.2.0 2024-05-15 [1] RSPM

fontawesome 0.5.3 2024-11-16 [1] RSPM

foreign 0.8-91 2026-01-29 [3] CRAN (R 4.5.3)

fs 2.0.1 2026-03-24 [1] RSPM

generics 0.1.4 2025-05-09 [1] RSPM

gert 2.3.1 2026-01-11 [1] RSPM

ggplot2 4.0.2 2026-02-03 [1] RSPM

gh 1.5.0 2025-05-26 [1] RSPM

git2r 0.36.2 2025-03-29 [1] RSPM

gitcreds 0.1.2 2022-09-08 [1] RSPM

glue 1.8.0 2024-09-30 [1] RSPM

graphics * 4.5.3 2026-03-11 [3] local

grDevices * 4.5.3 2026-03-11 [3] local

grid 4.5.3 2026-03-11 [3] local

gsm.core 1.2.0 2026-04-17 [1] Github (Gilead-BioStats/gsm.core@43cfd09)

gsm.kri 1.5.0 2026-04-17 [1] Github (Gilead-BioStats/gsm.kri@25b25b8)

gsm.mapping 1.1.3 2026-04-17 [1] Github (Gilead-BioStats/gsm.mapping@f26203b)

gsm.reporting 1.1.4 2026-04-17 [1] local

gt 1.3.0 2026-01-22 [1] RSPM

gtable 0.3.6 2024-10-25 [1] RSPM

highr 0.12 2026-03-06 [1] RSPM

htmltools 0.5.9 2025-12-04 [1] RSPM

htmlwidgets 1.6.4 2023-12-06 [1] RSPM

httr 1.4.8 2026-02-13 [1] RSPM

httr2 1.2.2 2025-12-08 [1] RSPM

ini 0.3.1 2018-05-20 [1] RSPM

isoband 0.3.0 2025-12-07 [1] RSPM

jquerylib 0.1.4 2021-04-26 [1] RSPM

jsonlite 2.0.0 2025-03-27 [1] RSPM

juicyjuice 0.1.0 2022-11-10 [1] RSPM

KernSmooth 2.23-26 2025-01-01 [3] CRAN (R 4.5.3)

knitr 1.51 2025-12-20 [1] RSPM

labeling 0.4.3 2023-08-29 [1] RSPM

later 1.4.8 2026-03-05 [1] RSPM

lattice 0.22-9 2026-02-09 [3] CRAN (R 4.5.3)

lazyeval 0.2.3 2026-04-04 [1] RSPM

lifecycle 1.0.5 2026-01-08 [1] RSPM

litedown 0.9 2025-12-18 [1] RSPM

log4r 0.4.4 2024-10-12 [1] RSPM

magrittr 2.0.5 2026-04-04 [1] RSPM

markdown 2.0 2025-03-23 [1] RSPM

MASS 7.3-65 2025-02-28 [3] CRAN (R 4.5.3)

Matrix 1.7-4 2025-08-28 [3] CRAN (R 4.5.3)

memoise 2.0.1 2021-11-26 [1] RSPM

methods * 4.5.3 2026-03-11 [3] local

mgcv 1.9-4 2025-11-07 [3] CRAN (R 4.5.3)

mime 0.13 2025-03-17 [1] RSPM

nlme 3.1-168 2025-03-31 [3] CRAN (R 4.5.3)

nnet 7.3-20 2025-01-01 [3] CRAN (R 4.5.3)

openssl 2.4.0 2026-04-15 [1] RSPM

otel 0.2.0 2025-08-29 [1] RSPM

pak 0.9.4 2026-04-17 [2] local

parallel 4.5.3 2026-03-11 [3] local

pillar 1.11.1 2025-09-17 [1] RSPM

pkgbuild 1.4.8 2025-05-26 [1] RSPM

pkgconfig 2.0.3 2019-09-22 [1] RSPM

pkgload 1.5.1 2026-04-01 [1] RSPM

praise 1.0.0 2015-08-11 [1] RSPM

processx 3.8.7 2026-04-01 [1] RSPM

promises 1.5.0 2025-11-01 [1] RSPM

ps 1.9.2 2026-03-31 [1] RSPM

purrr 1.2.2 2026-04-10 [1] RSPM

qcthat 1.1.2 2026-04-17 [1] Github (Gilead-Public/qcthat@d0958dc)

R6 2.6.1 2025-02-15 [1] RSPM

rappdirs 0.3.4 2026-01-17 [1] RSPM

RColorBrewer 1.1-3 2022-04-03 [1] RSPM

Rcpp 1.1.1-1 2026-04-16 [1] RSPM

reactable 0.4.5 2025-12-01 [1] RSPM

reactR 0.6.1 2024-09-14 [1] RSPM

rex 1.2.2 2026-03-28 [1] RSPM

rlang 1.2.0 2026-04-06 [1] RSPM

rmarkdown 2.31 2026-03-26 [1] RSPM

rpart 4.1.24 2025-01-07 [3] CRAN (R 4.5.3)

rprojroot 2.1.1 2025-08-26 [1] RSPM

rrapply 1.2.8 2025-11-25 [1] RSPM

rstudioapi 0.18.0 2026-01-16 [1] RSPM

S7 0.2.1-1 2025-11-14 [1] RSPM

sass 0.4.10 2025-04-11 [1] RSPM

scales 1.4.0 2025-04-24 [1] RSPM

sessioninfo 1.2.3 2025-02-05 [1] RSPM

spatial 7.3-18 2025-01-01 [3] CRAN (R 4.5.3)

splines 4.5.3 2026-03-11 [3] local

stats * 4.5.3 2026-03-11 [3] local

stats4 4.5.3 2026-03-11 [3] local

stringi 1.8.7 2025-03-27 [1] RSPM

stringr 1.6.0 2025-11-04 [1] RSPM

survival 3.8-6 2026-01-16 [3] CRAN (R 4.5.3)

sys 3.4.3 2024-10-04 [1] RSPM

tcltk 4.5.3 2026-03-11 [3] local

testthat 3.3.2 2026-01-11 [1] RSPM

tibble 3.3.1 2026-01-11 [1] RSPM

tidyr 1.3.2 2025-12-19 [1] RSPM

tidyselect 1.2.1 2024-03-11 [1] RSPM

tinytex 0.59 2026-03-28 [1] RSPM

tools 4.5.3 2026-03-11 [3] local

usethis 3.2.1 2025-09-06 [1] RSPM

utf8 1.2.6 2025-06-08 [1] RSPM

utils * 4.5.3 2026-03-11 [3] local

V8 8.1.0 2026-04-12 [1] RSPM

vctrs 0.7.3 2026-04-11 [1] RSPM

viridisLite 0.4.3 2026-02-04 [1] RSPM

waldo 0.6.2 2025-07-11 [1] RSPM

whisker 0.4.1 2022-12-05 [1] RSPM

withr 3.0.2 2024-10-28 [1] RSPM

xfun 0.57 2026-03-20 [1] RSPM

xml2 1.5.2 2026-01-17 [1] RSPM

yaml 2.3.12 2025-12-10 [1] RSPM

zip 2.3.3 2025-05-13 [1] RSPM

[1] /home/runner/work/_temp/Library

[2] /opt/R/4.5.3/lib/R/site-library

[3] /opt/R/4.5.3/lib/R/library

  • ── Packages attached to the search path.

──────────────────────────────────────────────────────────────────────────────