Skip to content

0.8-1

Choose a tag to compare

@michaelhallquist michaelhallquist released this 12 Mar 17:57
· 92 commits to main since this release
  • Improve CLI interface to support --help or BrainGnomes help
  • Add CLI status command to get project status from command line
  • Add dry_run option to run_project to see what would be run without executing it
  • Refactor prefetch to accept cohort specifications and extend them to T2w fetch.
  • Refactor prefetch to fall back to no desc field if desc:brain fails
  • Expand fMRIPrep TemplateFlow defaults to include MNI152NLin2009cAsym boldref, res-2 brain mask, brain probseg, and carpet dseg assets observed during workflow construction
  • Add conditional CIFTI TemplateFlow defaults so prefetch only stages MNI152NLin6Asym and fsLR sphere assets when fMRIPrep CLI options request --cifti-output
  • Harden prefetch caching and validation checks so that later failures invalidate skip logic
  • Make prefetch state query-specific so that an exact snapshot of templateflow files is retained
  • Move prefetch state files out of templateflow_home and into hashed project log paths; legacy state files in templateflow_home are now migrated and removed to avoid poisoning TemplateFlow standard-space discovery.
  • Expand TemplateFlow default to desc=None for T1w to mirror some versions of fmriprep.
  • Harden check on flywheel location to accommodate missing fw command.
  • Update RSQLite connections to default to synchronous=NULL to prevent spurious warnings
  • Included OASIS30 as a default template space for prefetch because it is used by fmriprep
  • bugfix: preserve cohort-<n> in BIDS parsing/reconstruction so postprocessing can resolve cohort-qualified fMRIPrep outputs such as space-MNIPediatricAsym_cohort-2