PBS_scripts/    -- submitting the real jobs 

setFiles.sh	-- use numvols,TR, base motion and base activation files
		    to create pulse, activation, and motion files for possum

bin/		-- possum,possum_sum,signal2image pulse 3dTcat,3drefit 
variable/	-- motion, activation
defaults/ 	-- brain, pulse, rf, mr
logs/		-- pulseSetup and makefiles log


basefiles.ls    -- list of files used by possum but not tracked by git
                -- rsync -av --files-from basefiles.ls ./ foranw@blacklight:~/Possum-02-2012/