Stabilize CI and docs builds while adding test coverage and code quality tooling#5
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Signed-off-by: Daniel Blankenberg <dan.blankenberg@gmail.com>
…orrelation.py Signed-off-by: Daniel Blankenberg <dan.blankenberg@gmail.com>
Signed-off-by: Daniel Blankenberg <dan.blankenberg@gmail.com>
Signed-off-by: Daniel Blankenberg <dan.blankenberg@gmail.com>
- Added types-PyYAML to the dev and all extras in pyproject.toml:81 and setup.py:98, so the lint job’s pip install -e ".[dev]" will provide yaml stubs. - Fixed the itertools.product typing complaint in qbiocode/utils/generate_qml_configs.py:146 with an explicit cast for the mixed-type parameter grid. - Removed the unsupported gamma argument from PegasosQSVC in qbiocode/learning/compute_qsvc.py:98. - Split the QNN network variable from the classifier in qbiocode/learning/compute_qnn.py:94 so mypy can accept both EstimatorQNN and SamplerQNN. - Returned explicit float(...) values in qbiocode/learning/compute_pqk.py:104 and qbiocode/embeddings/embed.py:62 to satisfy the declared return type. Signed-off-by: Daniel Blankenberg <dan.blankenberg@gmail.com>
Signed-off-by: Daniel Blankenberg <dan.blankenberg@gmail.com>
Signed-off-by: Daniel Blankenberg <dan.blankenberg@gmail.com>
Signed-off-by: Daniel Blankenberg <dan.blankenberg@gmail.com>
Signed-off-by: Daniel Blankenberg <dan.blankenberg@gmail.com>
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Signed-off-by: Daniel Blankenberg <dan.blankenberg@gmail.com>
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- Resolved merge conflicts in __init__.py files (data_generation, learning, utils, evaluation) - Applied black formatting to model_evaluation.py for consistency - Kept ensemble additions (compute_qensemble, evaluation_metrics, data_encoding, make_blobs) - Updated to use double quotes for string consistency with main branch - Integrated testing infrastructure from main (pytest, test files) - Integrated code quality improvements (black, isort, CI/CD updates) - Updated CHANGELOG with testing and code quality improvements from PR #5
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Description
This PR adds an initial automated test suite and then follows through with the CI, typing, formatting, and documentation fixes needed to make the project pass consistently in automation.
What Changed
Notes
Most of the churn is repository-wide formatting/import normalization, with the substantive functional changes centered on:
Type of Change
For Maintainers