What's New
- verify_references tool: Extracts DOIs from manuscripts, queries CrossRef API, returns metadata for comparison. Works standalone or as Reviewer Zero Pass 4.
- R Best Practices Protocol: Built-in statistical analysis protocol for reproducible, theory-driven analysis. Load with r_best_practices_prompt().
- Reviewer Zero upgraded to 4-pass protocol: Now includes reference verification (Pass 4) and methodological claim detection (Step 3c).
- clean_error_log renamed: Formerly clean_log, now correctly namespaced.
- read_file pagination: start_line/end_line support with line-numbered output.
- search_project_code: Regex search across project R files via base R grep.
- probe_scripts: Source scripts in a clean background session to discover objects without side effects.
- Multi-agent demo: Two agents (Codex + Claude Code) collaborating in one RStudio session.
Install
In RStudio: devtools::install_github("IMNMV/ClaudeR")
Or via PyPI for CLI tools: uvx clauder-mcp