Add SAREF, UCO, D3FEND, and CoDAMoS ontologies to registry

ontologies.Makefile

@@ -1560,6 +1560,28 @@ db/bfo2020_time.owl: download/bfo2020_time.owl
 	cp $< $@
 
 
+download/saref.owl: STAMP
+	curl -L -s https://saref.etsi.org/core/ > $@.tmp
+	sha256sum -b $@.tmp > $@.sha256
+	mv $@.tmp $@
+
+.PRECIOUS: download/saref.owl
+
+db/saref.owl: download/saref.owl
+	curl -sL -H 'Accept: text/turtle' https://saref.etsi.org/core/ > $@.ttl && robot convert -i $@.ttl -o $@ && rm $@.ttl
+
+
+download/saref4city.owl: STAMP
+	curl -L -s https://saref.etsi.org/saref4city/ > $@.tmp
+	sha256sum -b $@.tmp > $@.sha256
+	mv $@.tmp $@
+
+.PRECIOUS: download/saref4city.owl
+
+db/saref4city.owl: download/saref4city.owl
+	curl -sL -H 'Accept: text/turtle' https://saref.etsi.org/saref4city/ > $@.ttl && robot convert -i $@.ttl -o $@ && rm $@.ttl
+
+
 download/saref4ener.owl: STAMP
 	curl -L -s https://saref.etsi.org/saref4ener/ > $@.tmp
 	sha256sum -b $@.tmp > $@.sha256
@@ -1670,6 +1692,39 @@ db/sulo.owl: download/sulo.owl
 	robot merge -i $< -o $@
 
 
+download/uco.owl: STAMP
+	curl -L -s https://ontology.unifiedcyberontology.org/uco/uco > $@.tmp
+	sha256sum -b $@.tmp > $@.sha256
+	mv $@.tmp $@
+
+.PRECIOUS: download/uco.owl
+
+db/uco.owl: download/uco.owl
+	printf '<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:owl="http://www.w3.org/2002/07/owl#"><owl:Ontology rdf:about="http://purl.org/co"/></rdf:RDF>' > $@.stub.owl && printf '<catalog prefer="public" xmlns="urn:oasis:names:tc:entity:xmlns:xml:catalog"><uri name="http://purl.org/co" uri="$(notdir $@).stub.owl"/></catalog>' > $@.catalog.xml && robot merge --catalog $@.catalog.xml -i $< -o $@ && rm $@.stub.owl $@.catalog.xml
+
+
+download/d3fend.owl: STAMP
+	curl -L -s https://d3fend.mitre.org/ontologies/d3fend.owl > $@.tmp
+	sha256sum -b $@.tmp > $@.sha256
+	mv $@.tmp $@
+
+.PRECIOUS: download/d3fend.owl
+
+db/d3fend.owl: download/d3fend.owl
+	cp $< $@
+
+
+download/codamos.owl: STAMP
+	curl -L -s https://raw.githubusercontent.com/city-artificial-intelligence/diso/main/context-awareness/CoDAMoS/CoDAMoS.owl > $@.tmp
+	sha256sum -b $@.tmp > $@.sha256
+	mv $@.tmp $@
+
+.PRECIOUS: download/codamos.owl
+
+db/codamos.owl: download/codamos.owl
+	cp $< $@
+
+
 download/%.owl: STAMP
 	curl -L -s http://purl.obolibrary.org/obo/$*.owl > $@.tmp
 	sha256sum -b $@.tmp > $@.sha256
@@ -1680,4 +1735,4 @@ download/%.owl: STAMP
 db/%.owl: download/%.owl
 	robot merge -i $< -o $@
 
-EXTRA_ONTOLOGIES = swo chiro pcl chemessence ogco ncit fma maxo foodon chebiplus msio chemrof deb matpo panet phenx pride sosa emi npc modl phenio comploinc hba mba dmba dhba pba bero aio reacto xsmo bcio sio icd10who icd11f ordo gard icd10cm omim mondo-ingest oeo envthes wifire taxslim goldterms sdgio kin metpo d3o biovoices omop comet cco occo iof upa go go-lego go-amigo neo bao orcid ror cpont biolink biopax enanomapper mlo ito chemont molgenie cso obiws biopragmatics-reactome reactome-hs reactome-mm efo hcao hpinternational edam chr sweetAll oboe-core oboe-standards lov schema-dot-org prov dtype vaem qudtunit quantitykind cellosaurus cosmo gist gistBFO fhkb dbpendiaont uberoncm co_324 ppeo interpro pfam hgnc.genegroup hgnc sgd gtdb eccode uniprot uniprot.ptm credit rhea swisslipid drugbank drugcentral complexportal wikipathways pathbank kegg.genome drugmechdb rxnorm vccf ontobiotope nando ecso enigma_context cbo ontie pain como ecosim bervo valuesets micront nmdc_schema mixs kgcl fibo bfo2020 bfo2020_core bfo2020_notime bfo2020_time saref4ener saref4bldg hhearvs sdoho pathgo brick minsysont cmso asmo sulo
+EXTRA_ONTOLOGIES = swo chiro pcl chemessence ogco ncit fma maxo foodon chebiplus msio chemrof deb matpo panet phenx pride sosa emi npc modl phenio comploinc hba mba dmba dhba pba bero aio reacto xsmo bcio sio icd10who icd11f ordo gard icd10cm omim mondo-ingest oeo envthes wifire taxslim goldterms sdgio kin metpo d3o biovoices omop comet cco occo iof upa go go-lego go-amigo neo bao orcid ror cpont biolink biopax enanomapper mlo ito chemont molgenie cso obiws biopragmatics-reactome reactome-hs reactome-mm efo hcao hpinternational edam chr sweetAll oboe-core oboe-standards lov schema-dot-org prov dtype vaem qudtunit quantitykind cellosaurus cosmo gist gistBFO fhkb dbpendiaont uberoncm co_324 ppeo interpro pfam hgnc.genegroup hgnc sgd gtdb eccode uniprot uniprot.ptm credit rhea swisslipid drugbank drugcentral complexportal wikipathways pathbank kegg.genome drugmechdb rxnorm vccf ontobiotope nando ecso enigma_context cbo ontie pain como ecosim bervo valuesets micront nmdc_schema mixs kgcl fibo bfo2020 bfo2020_core bfo2020_notime bfo2020_time saref saref4city saref4ener saref4bldg hhearvs sdoho pathgo brick minsysont cmso asmo sulo uco d3fend codamos

src/semsql/builder/prefixes/prefixes.csv

@@ -226,6 +226,13 @@ mixs,https://w3id.org/mixs/
 kgcl,https://w3id.org/kgcl/
 fibo,https://spec.edmcouncil.org/fibo/ontology/
 cmnsav,https://www.omg.org/spec/Commons/AnnotationVocabulary/
+saref,https://saref.etsi.org/core/
+s4syst,https://saref.etsi.org/saref4syst/
+saref4city,https://saref.etsi.org/saref4city/
+s4city,https://saref.etsi.org/saref4city/
+saref,https://saref.etsi.org/core/
+cpsv,http://purl.org/vocab/cpsv#
+geo,http://www.opengis.net/ont/geosparql#
 saref4ener,https://saref.etsi.org/saref4ener/
 saref,https://saref.etsi.org/core/
 s4ener,https://saref.etsi.org/saref4ener/
@@ -257,6 +264,24 @@ CDCO,http://purls.helmholtz-metadaten.de/cdos/cdco/
 ASMO,https://purls.helmholtz-metadaten.de/asmo/
 MDO.calculation,https://w3id.org/mdo/calculation/
 sulo,https://w3id.org/sulo/
+uco.action,https://ontology.unifiedcyberontology.org/uco/action/
+uco.analysis,https://ontology.unifiedcyberontology.org/uco/analysis/
+uco.configuration,https://ontology.unifiedcyberontology.org/uco/configuration/
+uco.core,https://ontology.unifiedcyberontology.org/uco/core/
+uco.identity,https://ontology.unifiedcyberontology.org/uco/identity/
+uco.location,https://ontology.unifiedcyberontology.org/uco/location/
+uco.marking,https://ontology.unifiedcyberontology.org/uco/marking/
+uco.observable,https://ontology.unifiedcyberontology.org/uco/observable/
+uco.pattern,https://ontology.unifiedcyberontology.org/uco/pattern/
+uco.role,https://ontology.unifiedcyberontology.org/uco/role/
+uco.time,https://ontology.unifiedcyberontology.org/uco/time/
+uco.tool,https://ontology.unifiedcyberontology.org/uco/tool/
+uco.types,https://ontology.unifiedcyberontology.org/uco/types/
+uco.victim,https://ontology.unifiedcyberontology.org/uco/victim/
+uco.vocabulary,https://ontology.unifiedcyberontology.org/uco/vocabulary/
+uco.co,https://ontology.unifiedcyberontology.org/co/
+d3f,http://d3fend.mitre.org/ontologies/d3fend.owl#
+CoDAMoS,http://lpis.csd.auth.gr/ontologies/CoDAMoS/CoDAMoS.owl#
 RBO,http://purl.obolibrary.org/obo/RBO_
 RBO,http://purl.obolibrary.org/obo/RBO_
 CLYH,http://purl.obolibrary.org/obo/CLYH_

src/semsql/builder/prefixes/prefixes_local.csv

@@ -163,6 +163,13 @@ mixs,https://w3id.org/mixs/
 kgcl,https://w3id.org/kgcl/
 fibo,https://spec.edmcouncil.org/fibo/ontology/
 cmnsav,https://www.omg.org/spec/Commons/AnnotationVocabulary/
+saref,https://saref.etsi.org/core/
+s4syst,https://saref.etsi.org/saref4syst/
+saref4city,https://saref.etsi.org/saref4city/
+s4city,https://saref.etsi.org/saref4city/
+saref,https://saref.etsi.org/core/
+cpsv,http://purl.org/vocab/cpsv#
+geo,http://www.opengis.net/ont/geosparql#
 saref4ener,https://saref.etsi.org/saref4ener/
 saref,https://saref.etsi.org/core/
 s4ener,https://saref.etsi.org/saref4ener/
@@ -194,3 +201,21 @@ CDCO,http://purls.helmholtz-metadaten.de/cdos/cdco/
 ASMO,https://purls.helmholtz-metadaten.de/asmo/
 MDO.calculation,https://w3id.org/mdo/calculation/
 sulo,https://w3id.org/sulo/
+uco.action,https://ontology.unifiedcyberontology.org/uco/action/
+uco.analysis,https://ontology.unifiedcyberontology.org/uco/analysis/
+uco.configuration,https://ontology.unifiedcyberontology.org/uco/configuration/
+uco.core,https://ontology.unifiedcyberontology.org/uco/core/
+uco.identity,https://ontology.unifiedcyberontology.org/uco/identity/
+uco.location,https://ontology.unifiedcyberontology.org/uco/location/
+uco.marking,https://ontology.unifiedcyberontology.org/uco/marking/
+uco.observable,https://ontology.unifiedcyberontology.org/uco/observable/
+uco.pattern,https://ontology.unifiedcyberontology.org/uco/pattern/
+uco.role,https://ontology.unifiedcyberontology.org/uco/role/
+uco.time,https://ontology.unifiedcyberontology.org/uco/time/
+uco.tool,https://ontology.unifiedcyberontology.org/uco/tool/
+uco.types,https://ontology.unifiedcyberontology.org/uco/types/
+uco.victim,https://ontology.unifiedcyberontology.org/uco/victim/
+uco.vocabulary,https://ontology.unifiedcyberontology.org/uco/vocabulary/
+uco.co,https://ontology.unifiedcyberontology.org/co/
+d3f,http://d3fend.mitre.org/ontologies/d3fend.owl#
+CoDAMoS,http://lpis.csd.auth.gr/ontologies/CoDAMoS/CoDAMoS.owl#

src/semsql/builder/registry/ontologies.yaml

@@ -700,6 +700,25 @@ ontologies:
     url: https://raw.githubusercontent.com/BFO-ontology/BFO-2020/master/src/owl/profiles/temporal%20extensions/temporalized%20relations/owl/bfo-temporalized-relations.owl
 
 ## SAREF and Building Ontologies
+  saref:
+    description: ETSI SAREF core - Smart Applications REFerence ontology for IoT devices, functions and measurements
+    url: https://saref.etsi.org/core/
+    # Needs content negotiation - curl -H "Accept: text/turtle"
+    build_command: "curl -sL -H 'Accept: text/turtle' https://saref.etsi.org/core/ > $@.ttl && robot convert -i $@.ttl -o $@ && rm $@.ttl"
+    prefixmap:
+      saref: https://saref.etsi.org/core/
+      s4syst: https://saref.etsi.org/saref4syst/
+  saref4city:
+    description: ETSI SAREF extension for smart cities (city objects, public services, KPIs)
+    url: https://saref.etsi.org/saref4city/
+    # Needs content negotiation - curl -H "Accept: text/turtle"
+    build_command: "curl -sL -H 'Accept: text/turtle' https://saref.etsi.org/saref4city/ > $@.ttl && robot convert -i $@.ttl -o $@ && rm $@.ttl"
+    prefixmap:
+      saref4city: https://saref.etsi.org/saref4city/
+      s4city: https://saref.etsi.org/saref4city/
+      saref: https://saref.etsi.org/core/
+      cpsv: http://purl.org/vocab/cpsv#
+      geo: "http://www.opengis.net/ont/geosparql#"
   saref4ener:
     description: ETSI SAREF extension for the energy domain (smart energy, demand response)
     url: https://saref.etsi.org/saref4ener/
@@ -782,3 +801,48 @@ ontologies:
     format: turtle
     prefixmap:
       sulo: https://w3id.org/sulo/
+
+## Ontologies from the DISO collection (arXiv:2608.05867), civilian subset:
+## context-awareness, smart environments, and cyber/digital-forensics vocabularies.
+## See also brick, saref*, bfo* and cco entries above, which are also in DISO.
+  uco:
+    description: Unified Cyber Ontology - upper ontology for cyber investigation and digital forensics
+    url: https://ontology.unifiedcyberontology.org/uco/uco
+    # uco.rdf is a bare owl:imports wrapper over the module ontologies; all modules
+    # resolve over http except uco/types -> uco/co -> http://purl.org/co, whose host
+    # is dead, so that one import is redirected to an empty stub via an OWL catalog
+    has_imports: true
+    build_command: >-
+      printf '<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:owl="http://www.w3.org/2002/07/owl#"><owl:Ontology rdf:about="http://purl.org/co"/></rdf:RDF>' > $@.stub.owl &&
+      printf '<catalog prefer="public" xmlns="urn:oasis:names:tc:entity:xmlns:xml:catalog"><uri name="http://purl.org/co" uri="$(notdir $@).stub.owl"/></catalog>' > $@.catalog.xml &&
+      robot merge --catalog $@.catalog.xml -i $< -o $@ &&
+      rm $@.stub.owl $@.catalog.xml
+    prefixmap:
+      uco.action: https://ontology.unifiedcyberontology.org/uco/action/
+      uco.analysis: https://ontology.unifiedcyberontology.org/uco/analysis/
+      uco.configuration: https://ontology.unifiedcyberontology.org/uco/configuration/
+      uco.core: https://ontology.unifiedcyberontology.org/uco/core/
+      uco.identity: https://ontology.unifiedcyberontology.org/uco/identity/
+      uco.location: https://ontology.unifiedcyberontology.org/uco/location/
+      uco.marking: https://ontology.unifiedcyberontology.org/uco/marking/
+      uco.observable: https://ontology.unifiedcyberontology.org/uco/observable/
+      uco.pattern: https://ontology.unifiedcyberontology.org/uco/pattern/
+      uco.role: https://ontology.unifiedcyberontology.org/uco/role/
+      uco.time: https://ontology.unifiedcyberontology.org/uco/time/
+      uco.tool: https://ontology.unifiedcyberontology.org/uco/tool/
+      uco.types: https://ontology.unifiedcyberontology.org/uco/types/
+      uco.victim: https://ontology.unifiedcyberontology.org/uco/victim/
+      uco.vocabulary: https://ontology.unifiedcyberontology.org/uco/vocabulary/
+      uco.co: https://ontology.unifiedcyberontology.org/co/
+  d3fend:
+    description: D3FEND - knowledge graph of cybersecurity countermeasures and digital artifacts
+    url: https://d3fend.mitre.org/ontologies/d3fend.owl
+    prefixmap:
+      d3f: "http://d3fend.mitre.org/ontologies/d3fend.owl#"
+  codamos:
+    description: CoDAMoS - Context-Driven Adaptation of Mobile Services ontology (user, platform, service, environment)
+    # Original host (http://lpis.csd.auth.gr/ontologies/CoDAMoS/CoDAMoS.owl) is http-only;
+    # the DISO copy used here is byte-identical and served over https
+    url: https://raw.githubusercontent.com/city-artificial-intelligence/diso/main/context-awareness/CoDAMoS/CoDAMoS.owl
+    prefixmap:
+      CoDAMoS: "http://lpis.csd.auth.gr/ontologies/CoDAMoS/CoDAMoS.owl#"