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SafeSeqS - Safe Sequencing System

Python package for processing of SafeSeqS data (https://www.ncbi.nlm.nih.gov/pubmed/21586637). The pipeline analyzes multiple samples in fastq sequencing files to identify mutations present in a small fraction of DNA templates.

SafeSeqS Installation

Note: The safeseqs package is available only for Python 3.x.

Use pip to install the safeseqs package:

$ pip install safeseqs

SafeSeqS depends on several other packages and these will be installed automatically by pip if they are not already installed.

Contents

Quick Start
Input and Parameters
Example
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