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SafeSeqS Installation

Use pip to install the safeseqs package:

$ pip install safeseqs

SafeSeqS depends on several other packages and these will be installed automatically by pip if they are not already installed.

Required packages:

• scipy

Contents

Quick Start
Input and Parameters
Example
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Example

Example assuming input files are in a directory called C:\labName\studyName. The results should be stored in the sub-directory \runName under the C:\labName\studyName directory. The file SettingsTemplate.json should exist in the SafeSeqS Project Data directory and will be used to determine the run time settings. Up to 6 sub-processes may be run concurrently.

python -m safeseqs_controller -d C:\labName\studyName -r runName -sf SettingsTemplate.json -w 6