Fix javadoc markdown artifacts by AbhijitBhowmick · Pull Request #15309 · JabRef/jabref

AbhijitBhowmick · 2026-03-09T23:53:57Z

Related issues and pull requests

PR Description

1.This incorporates all the pending old Javadoc to Markdown changes required after merging #14891.
2.The following files are changed: 2.1.AutoCompletionTextInputBinding.java 2.2.JabRefCliPreferences.java 3.3.SearchBasedParserFetcher.java 4.4.StartNewStudyAction.java

Checklist

I own the copyright of the code submitted and I license it under the MIT license
I manually tested my changes in running JabRef (always required)
[/] I added JUnit tests for changes (if applicable)
[/] I added screenshots in the PR description (if change is visible to the user)
[/] I added a screenshot in the PR description showing a library with a single entry with me as author and as title the issue number
[/] I described the change in CHANGELOG.md in a way that can be understood by the average user (if change is visible to the user)
[/] I checked the user documentation for up to dateness and submitted a pull request to our user documentation repository

github-actions · 2026-03-09T23:54:10Z

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qodo-free-for-open-source-projects · 2026-03-09T23:54:17Z

Review Summary by Qodo

Convert Javadoc to Markdown and standardize comment formatting

✨ Enhancement

Walkthroughs

Description

• Convert Javadoc comment style from /// to standard /**/ format
• Replace ASCII art section dividers with // region: and // endRegion markers
• Remove HTML list tags (<ol>, </ol>) from documentation comments
• Improve code organization and readability with consistent comment formatting

Diagram

flowchart LR
  A["Old Javadoc Style<br/>/// comments<br/>ASCII dividers"] -- "Convert to" --> B["Standard Format<br/>/* */ comments<br/>region markers"]
  B -- "Applied to" --> C["4 Java Files<br/>AutoCompletion<br/>Preferences<br/>Fetcher<br/>Study Action"]

File Changes

1. jabgui/src/main/java/org/jabref/gui/autocompleter/AutoCompletionTextInputBinding.java Formatting +26/-24

Convert copyright header to standard block comment
• Convert copyright header from /// line comments to standard /* */ block comment format
• Maintain all copyright and license information with improved readability
jabgui/src/main/java/org/jabref/gui/autocompleter/AutoCompletionTextInputBinding.java

2. jabgui/src/main/java/org/jabref/gui/slr/StartNewStudyAction.java 📝 Documentation +2/-2

Remove HTML list tags from documentation
• Remove HTML <ol> and </ol> tags from Javadoc comments
• Replace with plain text format using /// prefix for list items
jabgui/src/main/java/org/jabref/gui/slr/StartNewStudyAction.java

3. jablib/src/main/java/org/jabref/logic/importer/SearchBasedParserFetcher.java 📝 Documentation +2/-2

Remove HTML list tags from interface docs
• Remove HTML <ol> and </ol> tags from interface documentation
• Simplify list formatting in Javadoc comments
jablib/src/main/java/org/jabref/logic/importer/SearchBasedParserFetcher.java

View more (1)

4. jablib/src/main/java/org/jabref/logic/preferences/JabRefCliPreferences.java Formatting +23/-39

Replace ASCII dividers with region markers throughout

• Replace ASCII art section dividers (/// with asterisks) with // region: and // endRegion
 markers
• Standardize 12+ section headers throughout the file including serializer logic, backing store
 access, cleanup, custom entry types, misc, network preferences, citation key patterns, bib entry
 preferences, internal preferences, linked files, import/export, importer preferences
• Improve code organization and readability with consistent region-based commenting

jablib/src/main/java/org/jabref/logic/preferences/JabRefCliPreferences.java

qodo-free-for-open-source-projects · 2026-03-09T23:54:18Z

Code Review by Qodo

🐞 Bugs (0) 📘 Rule violations (1) 📎 Requirement gaps (0)

1. // endRegion casing inconsistent ☑ 📘 Rule violation ✓ Correctness

Description

The PR introduces mixed // endregion and // endRegion markers in JabRefCliPreferences, which
breaks the established convention and can reduce readability/IDE-folding consistency. Standardize
the casing to match the project’s existing style.

Code

jablib/src/main/java/org/jabref/logic/preferences/JabRefCliPreferences.java[1169]
+    // endRegion

Evidence
Compliance requires adherence to JabRef style and avoiding typos/inconsistencies in changed code.
The same file contains both // endregion and newly added // endRegion markers, demonstrating
inconsistent convention introduced by this PR.
AGENTS.md
jablib/src/main/java/org/jabref/logic/preferences/JabRefCliPreferences.java[862-862]
jablib/src/main/java/org/jabref/logic/preferences/JabRefCliPreferences.java[1169-1169]
jablib/src/main/java/org/jabref/logic/preferences/JabRefCliPreferences.java[1393-1393]

Agent prompt

The issue below was found during a code review. Follow the provided context and guidance below and implement a solution

## Issue description
`JabRefCliPreferences` contains inconsistent region end markers (`// endregion` vs `// endRegion`). This is a style inconsistency/typo introduced in the changed code and may reduce readability and IDE code-folding consistency.
## Issue Context
The project commonly uses `// region: ...` paired with `// endregion` (lowercase `r`). In this PR, multiple `// endRegion` variants were added.
## Fix Focus Areas
- jablib/src/main/java/org/jabref/logic/preferences/JabRefCliPreferences.java[1169-1169]
- jablib/src/main/java/org/jabref/logic/preferences/JabRefCliPreferences.java[1210-1210]
- jablib/src/main/java/org/jabref/logic/preferences/JabRefCliPreferences.java[1324-1324]
- jablib/src/main/java/org/jabref/logic/preferences/JabRefCliPreferences.java[1351-1351]
- jablib/src/main/java/org/jabref/logic/preferences/JabRefCliPreferences.java[1393-1393]
- jablib/src/main/java/org/jabref/logic/preferences/JabRefCliPreferences.java[1459-1459]
- jablib/src/main/java/org/jabref/logic/preferences/JabRefCliPreferences.java[1561-1561]
- jablib/src/main/java/org/jabref/logic/preferences/JabRefCliPreferences.java[1697-1697]
- jablib/src/main/java/org/jabref/logic/preferences/JabRefCliPreferences.java[1803-1803]
- jablib/src/main/java/org/jabref/logic/preferences/JabRefCliPreferences.java[2359-2359]

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Stewori · 2026-03-10T19:54:48Z

This endregion now does not have a start. Looks like the file was already using some region definitions which interfere with the new ones. Please revisit the region splitting w.r.t. whether it still makes sense. Perhaps some regions are obsolete, need adjustment or reorganization. Can you suggest an adjustment to the regions to solve this issue? Ideally without changing things too radically.

Stewori · 2026-03-10T20:07:23Z

Okay, I found that in JabRefCliPreferences.java the existing old region declarations don't use a colon. (it's region name, not region: name). So I googled to find some reference on how the region patter should actually be. From what I found,
https://eclipse.dev/eclipse/markdown/?f=news/4.36/jdt.md
https://donraab.medium.com/grouping-java-methods-using-custom-code-folding-regions-with-intellij-bdff0b4fb2a3
it looks like the version without colon is actually correct.
@AbhijitBhowmick please adjust the new region declarations accordingly.

BTW it's a pity that when Javadoc introduced the @snippet tag, which supports region references, they introduced their own region style (// @start region=name ... // @end region=name), incompatible with the one used by IDEs: https://docs.oracle.com/en/java/javase/25/javadoc/snippets.html#GUID-E17E559E-BD80-4548-846F-1AC53C768CAD One opportunity to improve consistency in the Java ecosystem missed.

Stewori · 2026-03-10T20:29:57Z

Can you please edit the endRegion markings for consistency? (In the whole file) endRegion vs endregion, endRegion vs endRegion: name.
According to https://eclipse.dev/eclipse/markdown/?f=news/4.36/jdt.md endregion it is.

does intellj support them without colon?

In the JabRef codebase both variants are mixed. So, either it does not matter, or you are already missing some in IntelliJ.
According to https://blog.jetbrains.com/idea/2012/03/custom-code-folding-regions-in-intellij-idea-111/ the concept is originally a VS thing, IntelliJ added support for their syntax. I struggle to find a proper reference for the syntax definitions in the VS docs (because they are terrible, have dead links, were partly retired etc), but the majority of examples and blog-posts I find use it without colon.
If IntelliJ simply supports both (colon is optional), I suggest we should agree on one version for consistency and apply it whenever possible.

Okay, as a definite check, use the "Surround With" feature in IntelliJ. You will find, it does not use a colon.

I have writtten as '''//endregion ''' and I will changes old ones(endRegion ->endregion)

Intellij has a feature in "Surround with" to add region and endregion .This feature we can use to end confusion in future .

Yes we do not need colon after region.I will remove : after region (in 17 places).

Stewori · 2026-03-10T20:35:49Z

-    //*************************************************************************************************************
-    // ToDo: Cleanup
-    //*************************************************************************************************************
+    // region: Cleanup


I wonder what to do with this. Turning the cleanup-todo into a region Cleanup is misleading. Perhaps move the methods to the misc region? (or is there a better fit?) Unfortunately I do not know what the cleanup actually shall accomplish.
Perhaps, simply no region in this case, but just a // Todo: Cleanup comment (without ****... decoration).

I am not sure about this Todo:CleanUp. I will keep it as // Todo: Cleanup comment .

That's fine. It's arguably well beyond the scope of this issue.

This incorporates all the pending old Javadoc to Markdown changes required after merging JabRef#14891.The following files are changed: 1.AutoCompletionTextInputBinding.java 2.JabRefCliPreferences.java 3.SearchBasedParserFetcher.java 4.StartNewStudyAction.java 1.

1.File changed-JabRefCliPreferences.java

1.JabRefCliPreferences.java 2.SearchBasedParserFetcher.java

1.JabRefCliPreferences.java. The following changes are done:- 1.Added // endregion to maintain sync with region:AI And // region Push to application preferences and //region to Git 2.Changed region: to region 3.Changed region: Cleanup to previous ToDo: Cleanup 4.changed endRegion to end region 5.Adjusted dangling // endregion by merging Imported Preference tag(new one) with Other Preferences(old one)

1.JabRefCliPreferences.java. The following changes are done:- 1.Apply IntelliJ formatting

testlens-app · 2026-03-13T08:13:00Z

✅ All tests passed ✅

🏷️ Commit: 204f156
▶️ Tests: 10135 executed
⚪️ Checks: 51/51 completed

Learn more about TestLens at testlens.app.

calixtus

Let's move forward here

* Closes JabRef#14897 This incorporates all the pending old Javadoc to Markdown changes required after merging JabRef#14891.The following files are changed: 1.AutoCompletionTextInputBinding.java 2.JabRefCliPreferences.java 3.SearchBasedParserFetcher.java 4.StartNewStudyAction.java 1. * 1. * Rsolved mix up of endregion and endRegion.Final one is endregion. 1.File changed-JabRefCliPreferences.java * Rsolved format issue related to line space.Files changed. 1.JabRefCliPreferences.java 2.SearchBasedParserFetcher.java * Files changed. 1.JabRefCliPreferences.java. The following changes are done:- 1.Added // endregion to maintain sync with region:AI And // region Push to application preferences and //region to Git 2.Changed region: to region 3.Changed region: Cleanup to previous ToDo: Cleanup 4.changed endRegion to end region 5.Adjusted dangling // endregion by merging Imported Preference tag(new one) with Other Preferences(old one) * Files changed. 1.JabRefCliPreferences.java. The following changes are done:- 1.Apply IntelliJ formatting

* Close entry editor when last library is closed When no library tab is active, the entry editor remained visible. Added close() call in the activeTabProperty listener's else branch to handle the zero-libraries-open case. Fixes #13125 * Update CHANGELOG for #13125 * Fix case-insensitive DOI comparison in duplicate detection (#12967) * Chore(deps): Bump org.gradlex:java-module-dependencies in /build-logic (#15328) Bumps [org.gradlex:java-module-dependencies](https://github.com/gradlex-org/java-module-dependencies) from 1.12 to 1.12.1. - [Release notes](https://github.com/gradlex-org/java-module-dependencies/releases) - [Changelog](https://github.com/gradlex-org/java-module-dependencies/blob/main/CHANGELOG.md) - [Commits](gradlex-org/java-module-dependencies@v1.12...v1.12.1) --- updated-dependencies: - dependency-name: org.gradlex:java-module-dependencies dependency-version: 1.12.1 dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Chore(deps): Bump org.openrewrite.rewrite from 7.26.0 to 7.28.1 (#15326) Bumps org.openrewrite.rewrite from 7.26.0 to 7.28.1. --- updated-dependencies: - dependency-name: org.openrewrite.rewrite dependency-version: 7.28.1 dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Chore(deps): Bump org.mockito:mockito-core in /versions (#15330) Bumps [org.mockito:mockito-core](https://github.com/mockito/mockito) from 5.22.0 to 5.23.0. - [Release notes](https://github.com/mockito/mockito/releases) - [Commits](mockito/mockito@v5.22.0...v5.23.0) --- updated-dependencies: - dependency-name: org.mockito:mockito-core dependency-version: 5.23.0 dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Chore(deps): Bump org.cyclonedx.bom from 3.2.0 to 3.2.1 (#15327) Bumps org.cyclonedx.bom from 3.2.0 to 3.2.1. --- updated-dependencies: - dependency-name: org.cyclonedx.bom dependency-version: 3.2.1 dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Chore(deps): Bump com.squareup.okio:okio-jvm in /versions (#15329) Bumps [com.squareup.okio:okio-jvm](https://github.com/square/okio) from 3.16.4 to 3.17.0. - [Changelog](https://github.com/square/okio/blob/master/CHANGELOG.md) - [Commits](square/okio@parent-3.16.4...parent-3.17.0) --- updated-dependencies: - dependency-name: com.squareup.okio:okio-jvm dependency-version: 3.17.0 dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Carl Christian Snethlage <50491877+calixtus@users.noreply.github.com> * New translations jabref_en.properties (Italian) (#15334) * RIS export SP/EP fields when pages contain Unicode en-dash or em-dash (#15315) * Extend the split regex to match en-dash and em-dash * Added tests --------- Co-authored-by: Carl Christian Snethlage <50491877+calixtus@users.noreply.github.com> * Remove object redundancy, miscellaneous refactoring (#15332) * Remove object redundancy, miscellaneous refactoring Signed-off-by: subhramit <subhramit.bb@live.in> * Use abbreviationRepository parameter Signed-off-by: subhramit <subhramit.bb@live.in> * Use less injections for journal abbreviations repository Signed-off-by: subhramit <subhramit.bb@live.in> * Indent Signed-off-by: subhramit <subhramit.bb@live.in> * Revert to codepoint --------- Signed-off-by: subhramit <subhramit.bb@live.in> Co-authored-by: Carl Christian Snethlage <50491877+calixtus@users.noreply.github.com> * Add drag-and-drop support for Citation Relations tab (#15181) * Add drag-and-drop support for Citation Relations tab - Implement drag detection in CitationRelationsTab to allow dragging entries - Add drag support to ViewModelListCellFactory - Fix NullPointerException in FrameDndHandler when dropping onto tabs without IDs - Fixes #15135 * Fix: correctly set drop completion status for entries * Fix: Add Unreleased section and moved changelog entries * Fix CHANGELOG formatting and upstream linter errors; removed empty groups * Fix code consistency for cr * Add explicit type * Consistency in CHANGELOG.md --------- Co-authored-by: Christoph <siedlerkiller@gmail.com> Co-authored-by: Carl Christian Snethlage <calixtus@users.noreply.github.com> * Update dependency org.eclipse.jgit:org.eclipse.jgit.pgm to v7.6.0.202603022253-r (#15335) * Chore(deps): Bump org.cyclonedx.bom from 3.2.1 to 3.2.2 (#15337) Bumps org.cyclonedx.bom from 3.2.1 to 3.2.2. --- updated-dependencies: - dependency-name: org.cyclonedx.bom dependency-version: 3.2.2 dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Chore(deps): Bump org.eclipse.jgit:org.eclipse.jgit in /versions (#15338) Bumps [org.eclipse.jgit:org.eclipse.jgit](https://github.com/eclipse-jgit/jgit) from 7.5.0.202512021534-r to 7.6.0.202603022253-r. - [Commits](eclipse-jgit/jgit@v7.5.0.202512021534-r...v7.6.0.202603022253-r) --- updated-dependencies: - dependency-name: org.eclipse.jgit:org.eclipse.jgit dependency-version: 7.6.0.202603022253-r dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Add 'All' citation fetcher that aggregates results from all providers (#15292) * Add 'All' citation fetcher that aggregates and deduplicates results from all providers - Implements CitationFetcher as AllCitationFetcher aggregating CrossRef, OpenAlex, OpenCitations, and SemanticScholar - Deduplicates results using DuplicateCheck with BibDatabaseMode.BIBTEX - Returns maximum citation count across all providers - Tolerates individual provider failures gracefully - Adds ALL entry to CitationFetcherType enum and factory method - Covers behaviour with unit tests (failure tolerance, deduplication, max count) Closes #15029 * Add 'All' citation fetcher that aggregates results from all providers - Add ALL as first entry in CitationFetcherType enum - Implement AllCitationFetcher aggregating CrossRef, OpenAlex, OpenCitations, and SemanticScholar - Union results using DatabaseMerger with keyword separator from ImportFormatPreferences, as specified in the task - Return maximum citation count across all providers - Tolerate individual provider failures gracefully - Fix race condition in SearchCitationsRelationsService by marking citationFetcher and citationCountFetcher fields as volatile - Set ALL as the default citation fetcher in preferences - Add unit tests covering failure tolerance, deduplication, and max citation count Closes #15029 * Update CHANGELOG for issue #15029 * Address bot review: fix AllCitationFetcher and improve tests - Build provider list from CitationFetcherType enum (excluding ALL) to avoid duplicate list that can drift when new providers are added - Track anySuccess in fetch() and getCitationCount(); throw FetcherException when all providers fail instead of silently returning empty results - Emit WARN log when some providers fail but others succeed - Rename test variables to intent-revealing names - Fix citation count assertion to use assertEquals(Optional.of(20)) - Add tests for all-providers-fail and partial-failure scenarios * Trigger CI * Reformat AllCitationFetcher * Fix checkstyle: remove blank line at start of constructor block * Reverted back to semantic scholar ui preference * Revert default citation fetcher to SEMANTIC_SCHOLAR in EntryEditorPreferences * Re-trigger CI * Adapt tests to use real constructor with mocks, remove test constructor * fix unchecked excpetion --------- Co-authored-by: Siedlerchr <siedlerkiller@gmail.com> * Avoid error logs when search queries are incomplete (#15333) * Avoid error logs when search queries are incomplete Log the parsing error at debug level instead of error level. This prevents having unnecessary output when user is still entering input like "title =". * Update changelog for fixing incomplete search logging issue * Update changelog entry for incomplete search logging issue * Refine changelog entry for incomplete search logging issue * Chore(deps): Bump org.openrewrite.recipe:rewrite-recipe-bom from 3.24.0 to 3.25.0 (#15217) * Chore(deps): Bump org.openrewrite.recipe:rewrite-recipe-bom Bumps [org.openrewrite.recipe:rewrite-recipe-bom](https://github.com/openrewrite/rewrite-recipe-bom) from 3.24.0 to 3.25.0. - [Release notes](https://github.com/openrewrite/rewrite-recipe-bom/releases) - [Commits](openrewrite/rewrite-recipe-bom@v3.24.0...v3.25.0) --- updated-dependencies: - dependency-name: org.openrewrite.recipe:rewrite-recipe-bom dependency-version: 3.25.0 dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> * udpate plugin * update rewrite --------- Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Siedlerchr <siedlerkiller@gmail.com> * Select better value in MultiMergeEntries dialog component (#15027) (#15255) * Select better value in MultiMergeEntries dialog component (#15027) * Use PlausibilityComparatorFactory in MultiMergeEntriesViewModel to select the more plausible value when merging fields from multiple sources, instead of always keeping the first-seen value. * Add DateFieldPlausibilityComparator to prefer more specific dates. * Add unit tests for DateFieldPlausibilityComparator * implement review comments * Fix trailing whitespace in MultiMergeEntriesViewModelTest * Trigger CI * CI: re-trigger * CI: re-trigger --------- Co-authored-by: Christoph <siedlerkiller@gmail.com> * Fix reset and import for PreviewPreferences (#15306) * Cleanups * Refactor PreviewPreferences for resetting and import * Some null checks and migrations * Fix wrong notnull * Fix import * Avoid addAll crash on immutable List * Add forgotten customPreviewLayout * Fix artifact from code iteration * Refactor for consistency * Fix artifact from code iteration * Enhance dummy fallback layout * Try to fix jbang * Apply IDE suggestions * Fix weird checkstyle behaviour * Add default styles * Fix migration tests * Add tests * Small cleanups --------- Co-authored-by: Carl Christian Snethlage <calixtus@users.noreply.github.com> * Fix javadoc markdown artifacts (#15309) * Closes #14897 This incorporates all the pending old Javadoc to Markdown changes required after merging #14891.The following files are changed: 1.AutoCompletionTextInputBinding.java 2.JabRefCliPreferences.java 3.SearchBasedParserFetcher.java 4.StartNewStudyAction.java 1. * 1. * Rsolved mix up of endregion and endRegion.Final one is endregion. 1.File changed-JabRefCliPreferences.java * Rsolved format issue related to line space.Files changed. 1.JabRefCliPreferences.java 2.SearchBasedParserFetcher.java * Files changed. 1.JabRefCliPreferences.java. The following changes are done:- 1.Added // endregion to maintain sync with region:AI And // region Push to application preferences and //region to Git 2.Changed region: to region 3.Changed region: Cleanup to previous ToDo: Cleanup 4.changed endRegion to end region 5.Adjusted dangling // endregion by merging Imported Preference tag(new one) with Other Preferences(old one) * Files changed. 1.JabRefCliPreferences.java. The following changes are done:- 1.Apply IntelliJ formatting * Update CHANGELOG for JabRef#12967 * Apply case-insensitive comparison only to DOI identifiers * Apply IntelliJ code formatting to DuplicateCheck and DuplicateCheckTest * Add tests for case-insensitive DOI duplicate detection * Fix case-insensitive DOI comparison in duplicate detection * fix formatting --------- Signed-off-by: dependabot[bot] <support@github.com> Signed-off-by: subhramit <subhramit.bb@live.in> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Carl Christian Snethlage <50491877+calixtus@users.noreply.github.com> Co-authored-by: Christoph <siedlerkiller@gmail.com> Co-authored-by: Faneesh Juneja <willowstration@gmail.com> Co-authored-by: Subhramit Basu <subhramit.bb@live.in> Co-authored-by: Paul <thecoder777.github@gmail.com> Co-authored-by: Carl Christian Snethlage <calixtus@users.noreply.github.com> Co-authored-by: Mend Renovate <bot@renovateapp.com> Co-authored-by: Nishant Dasgupta <nishant.24bcs10451@sst.scaler.com> Co-authored-by: Mike Zhang <97817030+mikezhanghaozhe@users.noreply.github.com> Co-authored-by: JunWang222 <70090336+JunWang222@users.noreply.github.com> Co-authored-by: AbhijitBhowmick <94289124+AbhijitBhowmick@users.noreply.github.com>

* Closes JabRef#14897 This incorporates all the pending old Javadoc to Markdown changes required after merging JabRef#14891.The following files are changed: 1.AutoCompletionTextInputBinding.java 2.JabRefCliPreferences.java 3.SearchBasedParserFetcher.java 4.StartNewStudyAction.java 1. * 1. * Rsolved mix up of endregion and endRegion.Final one is endregion. 1.File changed-JabRefCliPreferences.java * Rsolved format issue related to line space.Files changed. 1.JabRefCliPreferences.java 2.SearchBasedParserFetcher.java * Files changed. 1.JabRefCliPreferences.java. The following changes are done:- 1.Added // endregion to maintain sync with region:AI And // region Push to application preferences and //region to Git 2.Changed region: to region 3.Changed region: Cleanup to previous ToDo: Cleanup 4.changed endRegion to end region 5.Adjusted dangling // endregion by merging Imported Preference tag(new one) with Other Preferences(old one) * Files changed. 1.JabRefCliPreferences.java. The following changes are done:- 1.Apply IntelliJ formatting

* Close entry editor when last library is closed When no library tab is active, the entry editor remained visible. Added close() call in the activeTabProperty listener's else branch to handle the zero-libraries-open case. Fixes JabRef#13125 * Update CHANGELOG for JabRef#13125 * Fix case-insensitive DOI comparison in duplicate detection (JabRef#12967) * Chore(deps): Bump org.gradlex:java-module-dependencies in /build-logic (JabRef#15328) Bumps [org.gradlex:java-module-dependencies](https://github.com/gradlex-org/java-module-dependencies) from 1.12 to 1.12.1. - [Release notes](https://github.com/gradlex-org/java-module-dependencies/releases) - [Changelog](https://github.com/gradlex-org/java-module-dependencies/blob/main/CHANGELOG.md) - [Commits](gradlex-org/java-module-dependencies@v1.12...v1.12.1) --- updated-dependencies: - dependency-name: org.gradlex:java-module-dependencies dependency-version: 1.12.1 dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Chore(deps): Bump org.openrewrite.rewrite from 7.26.0 to 7.28.1 (JabRef#15326) Bumps org.openrewrite.rewrite from 7.26.0 to 7.28.1. --- updated-dependencies: - dependency-name: org.openrewrite.rewrite dependency-version: 7.28.1 dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Chore(deps): Bump org.mockito:mockito-core in /versions (JabRef#15330) Bumps [org.mockito:mockito-core](https://github.com/mockito/mockito) from 5.22.0 to 5.23.0. - [Release notes](https://github.com/mockito/mockito/releases) - [Commits](mockito/mockito@v5.22.0...v5.23.0) --- updated-dependencies: - dependency-name: org.mockito:mockito-core dependency-version: 5.23.0 dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Chore(deps): Bump org.cyclonedx.bom from 3.2.0 to 3.2.1 (JabRef#15327) Bumps org.cyclonedx.bom from 3.2.0 to 3.2.1. --- updated-dependencies: - dependency-name: org.cyclonedx.bom dependency-version: 3.2.1 dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Chore(deps): Bump com.squareup.okio:okio-jvm in /versions (JabRef#15329) Bumps [com.squareup.okio:okio-jvm](https://github.com/square/okio) from 3.16.4 to 3.17.0. - [Changelog](https://github.com/square/okio/blob/master/CHANGELOG.md) - [Commits](square/okio@parent-3.16.4...parent-3.17.0) --- updated-dependencies: - dependency-name: com.squareup.okio:okio-jvm dependency-version: 3.17.0 dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Carl Christian Snethlage <50491877+calixtus@users.noreply.github.com> * New translations jabref_en.properties (Italian) (JabRef#15334) * RIS export SP/EP fields when pages contain Unicode en-dash or em-dash (JabRef#15315) * Extend the split regex to match en-dash and em-dash * Added tests --------- Co-authored-by: Carl Christian Snethlage <50491877+calixtus@users.noreply.github.com> * Remove object redundancy, miscellaneous refactoring (JabRef#15332) * Remove object redundancy, miscellaneous refactoring Signed-off-by: subhramit <subhramit.bb@live.in> * Use abbreviationRepository parameter Signed-off-by: subhramit <subhramit.bb@live.in> * Use less injections for journal abbreviations repository Signed-off-by: subhramit <subhramit.bb@live.in> * Indent Signed-off-by: subhramit <subhramit.bb@live.in> * Revert to codepoint --------- Signed-off-by: subhramit <subhramit.bb@live.in> Co-authored-by: Carl Christian Snethlage <50491877+calixtus@users.noreply.github.com> * Add drag-and-drop support for Citation Relations tab (JabRef#15181) * Add drag-and-drop support for Citation Relations tab - Implement drag detection in CitationRelationsTab to allow dragging entries - Add drag support to ViewModelListCellFactory - Fix NullPointerException in FrameDndHandler when dropping onto tabs without IDs - Fixes JabRef#15135 * Fix: correctly set drop completion status for entries * Fix: Add Unreleased section and moved changelog entries * Fix CHANGELOG formatting and upstream linter errors; removed empty groups * Fix code consistency for cr * Add explicit type * Consistency in CHANGELOG.md --------- Co-authored-by: Christoph <siedlerkiller@gmail.com> Co-authored-by: Carl Christian Snethlage <calixtus@users.noreply.github.com> * Update dependency org.eclipse.jgit:org.eclipse.jgit.pgm to v7.6.0.202603022253-r (JabRef#15335) * Chore(deps): Bump org.cyclonedx.bom from 3.2.1 to 3.2.2 (JabRef#15337) Bumps org.cyclonedx.bom from 3.2.1 to 3.2.2. --- updated-dependencies: - dependency-name: org.cyclonedx.bom dependency-version: 3.2.2 dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Chore(deps): Bump org.eclipse.jgit:org.eclipse.jgit in /versions (JabRef#15338) Bumps [org.eclipse.jgit:org.eclipse.jgit](https://github.com/eclipse-jgit/jgit) from 7.5.0.202512021534-r to 7.6.0.202603022253-r. - [Commits](eclipse-jgit/jgit@v7.5.0.202512021534-r...v7.6.0.202603022253-r) --- updated-dependencies: - dependency-name: org.eclipse.jgit:org.eclipse.jgit dependency-version: 7.6.0.202603022253-r dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Add 'All' citation fetcher that aggregates results from all providers (JabRef#15292) * Add 'All' citation fetcher that aggregates and deduplicates results from all providers - Implements CitationFetcher as AllCitationFetcher aggregating CrossRef, OpenAlex, OpenCitations, and SemanticScholar - Deduplicates results using DuplicateCheck with BibDatabaseMode.BIBTEX - Returns maximum citation count across all providers - Tolerates individual provider failures gracefully - Adds ALL entry to CitationFetcherType enum and factory method - Covers behaviour with unit tests (failure tolerance, deduplication, max count) Closes JabRef#15029 * Add 'All' citation fetcher that aggregates results from all providers - Add ALL as first entry in CitationFetcherType enum - Implement AllCitationFetcher aggregating CrossRef, OpenAlex, OpenCitations, and SemanticScholar - Union results using DatabaseMerger with keyword separator from ImportFormatPreferences, as specified in the task - Return maximum citation count across all providers - Tolerate individual provider failures gracefully - Fix race condition in SearchCitationsRelationsService by marking citationFetcher and citationCountFetcher fields as volatile - Set ALL as the default citation fetcher in preferences - Add unit tests covering failure tolerance, deduplication, and max citation count Closes JabRef#15029 * Update CHANGELOG for issue JabRef#15029 * Address bot review: fix AllCitationFetcher and improve tests - Build provider list from CitationFetcherType enum (excluding ALL) to avoid duplicate list that can drift when new providers are added - Track anySuccess in fetch() and getCitationCount(); throw FetcherException when all providers fail instead of silently returning empty results - Emit WARN log when some providers fail but others succeed - Rename test variables to intent-revealing names - Fix citation count assertion to use assertEquals(Optional.of(20)) - Add tests for all-providers-fail and partial-failure scenarios * Trigger CI * Reformat AllCitationFetcher * Fix checkstyle: remove blank line at start of constructor block * Reverted back to semantic scholar ui preference * Revert default citation fetcher to SEMANTIC_SCHOLAR in EntryEditorPreferences * Re-trigger CI * Adapt tests to use real constructor with mocks, remove test constructor * fix unchecked excpetion --------- Co-authored-by: Siedlerchr <siedlerkiller@gmail.com> * Avoid error logs when search queries are incomplete (JabRef#15333) * Avoid error logs when search queries are incomplete Log the parsing error at debug level instead of error level. This prevents having unnecessary output when user is still entering input like "title =". * Update changelog for fixing incomplete search logging issue * Update changelog entry for incomplete search logging issue * Refine changelog entry for incomplete search logging issue * Chore(deps): Bump org.openrewrite.recipe:rewrite-recipe-bom from 3.24.0 to 3.25.0 (JabRef#15217) * Chore(deps): Bump org.openrewrite.recipe:rewrite-recipe-bom Bumps [org.openrewrite.recipe:rewrite-recipe-bom](https://github.com/openrewrite/rewrite-recipe-bom) from 3.24.0 to 3.25.0. - [Release notes](https://github.com/openrewrite/rewrite-recipe-bom/releases) - [Commits](openrewrite/rewrite-recipe-bom@v3.24.0...v3.25.0) --- updated-dependencies: - dependency-name: org.openrewrite.recipe:rewrite-recipe-bom dependency-version: 3.25.0 dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> * udpate plugin * update rewrite --------- Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Siedlerchr <siedlerkiller@gmail.com> * Select better value in MultiMergeEntries dialog component (JabRef#15027) (JabRef#15255) * Select better value in MultiMergeEntries dialog component (JabRef#15027) * Use PlausibilityComparatorFactory in MultiMergeEntriesViewModel to select the more plausible value when merging fields from multiple sources, instead of always keeping the first-seen value. * Add DateFieldPlausibilityComparator to prefer more specific dates. * Add unit tests for DateFieldPlausibilityComparator * implement review comments * Fix trailing whitespace in MultiMergeEntriesViewModelTest * Trigger CI * CI: re-trigger * CI: re-trigger --------- Co-authored-by: Christoph <siedlerkiller@gmail.com> * Fix reset and import for PreviewPreferences (JabRef#15306) * Cleanups * Refactor PreviewPreferences for resetting and import * Some null checks and migrations * Fix wrong notnull * Fix import * Avoid addAll crash on immutable List * Add forgotten customPreviewLayout * Fix artifact from code iteration * Refactor for consistency * Fix artifact from code iteration * Enhance dummy fallback layout * Try to fix jbang * Apply IDE suggestions * Fix weird checkstyle behaviour * Add default styles * Fix migration tests * Add tests * Small cleanups --------- Co-authored-by: Carl Christian Snethlage <calixtus@users.noreply.github.com> * Fix javadoc markdown artifacts (JabRef#15309) * Closes JabRef#14897 This incorporates all the pending old Javadoc to Markdown changes required after merging JabRef#14891.The following files are changed: 1.AutoCompletionTextInputBinding.java 2.JabRefCliPreferences.java 3.SearchBasedParserFetcher.java 4.StartNewStudyAction.java 1. * 1. * Rsolved mix up of endregion and endRegion.Final one is endregion. 1.File changed-JabRefCliPreferences.java * Rsolved format issue related to line space.Files changed. 1.JabRefCliPreferences.java 2.SearchBasedParserFetcher.java * Files changed. 1.JabRefCliPreferences.java. The following changes are done:- 1.Added // endregion to maintain sync with region:AI And // region Push to application preferences and //region to Git 2.Changed region: to region 3.Changed region: Cleanup to previous ToDo: Cleanup 4.changed endRegion to end region 5.Adjusted dangling // endregion by merging Imported Preference tag(new one) with Other Preferences(old one) * Files changed. 1.JabRefCliPreferences.java. The following changes are done:- 1.Apply IntelliJ formatting * Update CHANGELOG for JabRef#12967 * Apply case-insensitive comparison only to DOI identifiers * Apply IntelliJ code formatting to DuplicateCheck and DuplicateCheckTest * Add tests for case-insensitive DOI duplicate detection * Fix case-insensitive DOI comparison in duplicate detection * fix formatting --------- Signed-off-by: dependabot[bot] <support@github.com> Signed-off-by: subhramit <subhramit.bb@live.in> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Carl Christian Snethlage <50491877+calixtus@users.noreply.github.com> Co-authored-by: Christoph <siedlerkiller@gmail.com> Co-authored-by: Faneesh Juneja <willowstration@gmail.com> Co-authored-by: Subhramit Basu <subhramit.bb@live.in> Co-authored-by: Paul <thecoder777.github@gmail.com> Co-authored-by: Carl Christian Snethlage <calixtus@users.noreply.github.com> Co-authored-by: Mend Renovate <bot@renovateapp.com> Co-authored-by: Nishant Dasgupta <nishant.24bcs10451@sst.scaler.com> Co-authored-by: Mike Zhang <97817030+mikezhanghaozhe@users.noreply.github.com> Co-authored-by: JunWang222 <70090336+JunWang222@users.noreply.github.com> Co-authored-by: AbhijitBhowmick <94289124+AbhijitBhowmick@users.noreply.github.com>

* Closes JabRef#14897 This incorporates all the pending old Javadoc to Markdown changes required after merging JabRef#14891.The following files are changed: 1.AutoCompletionTextInputBinding.java 2.JabRefCliPreferences.java 3.SearchBasedParserFetcher.java 4.StartNewStudyAction.java 1. * 1. * Rsolved mix up of endregion and endRegion.Final one is endregion. 1.File changed-JabRefCliPreferences.java * Rsolved format issue related to line space.Files changed. 1.JabRefCliPreferences.java 2.SearchBasedParserFetcher.java * Files changed. 1.JabRefCliPreferences.java. The following changes are done:- 1.Added // endregion to maintain sync with region:AI And // region Push to application preferences and //region to Git 2.Changed region: to region 3.Changed region: Cleanup to previous ToDo: Cleanup 4.changed endRegion to end region 5.Adjusted dangling // endregion by merging Imported Preference tag(new one) with Other Preferences(old one) * Files changed. 1.JabRefCliPreferences.java. The following changes are done:- 1.Apply IntelliJ formatting

* Close entry editor when last library is closed When no library tab is active, the entry editor remained visible. Added close() call in the activeTabProperty listener's else branch to handle the zero-libraries-open case. Fixes JabRef#13125 * Update CHANGELOG for JabRef#13125 * Fix case-insensitive DOI comparison in duplicate detection (JabRef#12967) * Chore(deps): Bump org.gradlex:java-module-dependencies in /build-logic (JabRef#15328) Bumps [org.gradlex:java-module-dependencies](https://github.com/gradlex-org/java-module-dependencies) from 1.12 to 1.12.1. - [Release notes](https://github.com/gradlex-org/java-module-dependencies/releases) - [Changelog](https://github.com/gradlex-org/java-module-dependencies/blob/main/CHANGELOG.md) - [Commits](gradlex-org/java-module-dependencies@v1.12...v1.12.1) --- updated-dependencies: - dependency-name: org.gradlex:java-module-dependencies dependency-version: 1.12.1 dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Chore(deps): Bump org.openrewrite.rewrite from 7.26.0 to 7.28.1 (JabRef#15326) Bumps org.openrewrite.rewrite from 7.26.0 to 7.28.1. --- updated-dependencies: - dependency-name: org.openrewrite.rewrite dependency-version: 7.28.1 dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Chore(deps): Bump org.mockito:mockito-core in /versions (JabRef#15330) Bumps [org.mockito:mockito-core](https://github.com/mockito/mockito) from 5.22.0 to 5.23.0. - [Release notes](https://github.com/mockito/mockito/releases) - [Commits](mockito/mockito@v5.22.0...v5.23.0) --- updated-dependencies: - dependency-name: org.mockito:mockito-core dependency-version: 5.23.0 dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Chore(deps): Bump org.cyclonedx.bom from 3.2.0 to 3.2.1 (JabRef#15327) Bumps org.cyclonedx.bom from 3.2.0 to 3.2.1. --- updated-dependencies: - dependency-name: org.cyclonedx.bom dependency-version: 3.2.1 dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Chore(deps): Bump com.squareup.okio:okio-jvm in /versions (JabRef#15329) Bumps [com.squareup.okio:okio-jvm](https://github.com/square/okio) from 3.16.4 to 3.17.0. - [Changelog](https://github.com/square/okio/blob/master/CHANGELOG.md) - [Commits](square/okio@parent-3.16.4...parent-3.17.0) --- updated-dependencies: - dependency-name: com.squareup.okio:okio-jvm dependency-version: 3.17.0 dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Carl Christian Snethlage <50491877+calixtus@users.noreply.github.com> * New translations jabref_en.properties (Italian) (JabRef#15334) * RIS export SP/EP fields when pages contain Unicode en-dash or em-dash (JabRef#15315) * Extend the split regex to match en-dash and em-dash * Added tests --------- Co-authored-by: Carl Christian Snethlage <50491877+calixtus@users.noreply.github.com> * Remove object redundancy, miscellaneous refactoring (JabRef#15332) * Remove object redundancy, miscellaneous refactoring Signed-off-by: subhramit <subhramit.bb@live.in> * Use abbreviationRepository parameter Signed-off-by: subhramit <subhramit.bb@live.in> * Use less injections for journal abbreviations repository Signed-off-by: subhramit <subhramit.bb@live.in> * Indent Signed-off-by: subhramit <subhramit.bb@live.in> * Revert to codepoint --------- Signed-off-by: subhramit <subhramit.bb@live.in> Co-authored-by: Carl Christian Snethlage <50491877+calixtus@users.noreply.github.com> * Add drag-and-drop support for Citation Relations tab (JabRef#15181) * Add drag-and-drop support for Citation Relations tab - Implement drag detection in CitationRelationsTab to allow dragging entries - Add drag support to ViewModelListCellFactory - Fix NullPointerException in FrameDndHandler when dropping onto tabs without IDs - Fixes JabRef#15135 * Fix: correctly set drop completion status for entries * Fix: Add Unreleased section and moved changelog entries * Fix CHANGELOG formatting and upstream linter errors; removed empty groups * Fix code consistency for cr * Add explicit type * Consistency in CHANGELOG.md --------- Co-authored-by: Christoph <siedlerkiller@gmail.com> Co-authored-by: Carl Christian Snethlage <calixtus@users.noreply.github.com> * Update dependency org.eclipse.jgit:org.eclipse.jgit.pgm to v7.6.0.202603022253-r (JabRef#15335) * Chore(deps): Bump org.cyclonedx.bom from 3.2.1 to 3.2.2 (JabRef#15337) Bumps org.cyclonedx.bom from 3.2.1 to 3.2.2. --- updated-dependencies: - dependency-name: org.cyclonedx.bom dependency-version: 3.2.2 dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Chore(deps): Bump org.eclipse.jgit:org.eclipse.jgit in /versions (JabRef#15338) Bumps [org.eclipse.jgit:org.eclipse.jgit](https://github.com/eclipse-jgit/jgit) from 7.5.0.202512021534-r to 7.6.0.202603022253-r. - [Commits](eclipse-jgit/jgit@v7.5.0.202512021534-r...v7.6.0.202603022253-r) --- updated-dependencies: - dependency-name: org.eclipse.jgit:org.eclipse.jgit dependency-version: 7.6.0.202603022253-r dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Add 'All' citation fetcher that aggregates results from all providers (JabRef#15292) * Add 'All' citation fetcher that aggregates and deduplicates results from all providers - Implements CitationFetcher as AllCitationFetcher aggregating CrossRef, OpenAlex, OpenCitations, and SemanticScholar - Deduplicates results using DuplicateCheck with BibDatabaseMode.BIBTEX - Returns maximum citation count across all providers - Tolerates individual provider failures gracefully - Adds ALL entry to CitationFetcherType enum and factory method - Covers behaviour with unit tests (failure tolerance, deduplication, max count) Closes JabRef#15029 * Add 'All' citation fetcher that aggregates results from all providers - Add ALL as first entry in CitationFetcherType enum - Implement AllCitationFetcher aggregating CrossRef, OpenAlex, OpenCitations, and SemanticScholar - Union results using DatabaseMerger with keyword separator from ImportFormatPreferences, as specified in the task - Return maximum citation count across all providers - Tolerate individual provider failures gracefully - Fix race condition in SearchCitationsRelationsService by marking citationFetcher and citationCountFetcher fields as volatile - Set ALL as the default citation fetcher in preferences - Add unit tests covering failure tolerance, deduplication, and max citation count Closes JabRef#15029 * Update CHANGELOG for issue JabRef#15029 * Address bot review: fix AllCitationFetcher and improve tests - Build provider list from CitationFetcherType enum (excluding ALL) to avoid duplicate list that can drift when new providers are added - Track anySuccess in fetch() and getCitationCount(); throw FetcherException when all providers fail instead of silently returning empty results - Emit WARN log when some providers fail but others succeed - Rename test variables to intent-revealing names - Fix citation count assertion to use assertEquals(Optional.of(20)) - Add tests for all-providers-fail and partial-failure scenarios * Trigger CI * Reformat AllCitationFetcher * Fix checkstyle: remove blank line at start of constructor block * Reverted back to semantic scholar ui preference * Revert default citation fetcher to SEMANTIC_SCHOLAR in EntryEditorPreferences * Re-trigger CI * Adapt tests to use real constructor with mocks, remove test constructor * fix unchecked excpetion --------- Co-authored-by: Siedlerchr <siedlerkiller@gmail.com> * Avoid error logs when search queries are incomplete (JabRef#15333) * Avoid error logs when search queries are incomplete Log the parsing error at debug level instead of error level. This prevents having unnecessary output when user is still entering input like "title =". * Update changelog for fixing incomplete search logging issue * Update changelog entry for incomplete search logging issue * Refine changelog entry for incomplete search logging issue * Chore(deps): Bump org.openrewrite.recipe:rewrite-recipe-bom from 3.24.0 to 3.25.0 (JabRef#15217) * Chore(deps): Bump org.openrewrite.recipe:rewrite-recipe-bom Bumps [org.openrewrite.recipe:rewrite-recipe-bom](https://github.com/openrewrite/rewrite-recipe-bom) from 3.24.0 to 3.25.0. - [Release notes](https://github.com/openrewrite/rewrite-recipe-bom/releases) - [Commits](openrewrite/rewrite-recipe-bom@v3.24.0...v3.25.0) --- updated-dependencies: - dependency-name: org.openrewrite.recipe:rewrite-recipe-bom dependency-version: 3.25.0 dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> * udpate plugin * update rewrite --------- Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Siedlerchr <siedlerkiller@gmail.com> * Select better value in MultiMergeEntries dialog component (JabRef#15027) (JabRef#15255) * Select better value in MultiMergeEntries dialog component (JabRef#15027) * Use PlausibilityComparatorFactory in MultiMergeEntriesViewModel to select the more plausible value when merging fields from multiple sources, instead of always keeping the first-seen value. * Add DateFieldPlausibilityComparator to prefer more specific dates. * Add unit tests for DateFieldPlausibilityComparator * implement review comments * Fix trailing whitespace in MultiMergeEntriesViewModelTest * Trigger CI * CI: re-trigger * CI: re-trigger --------- Co-authored-by: Christoph <siedlerkiller@gmail.com> * Fix reset and import for PreviewPreferences (JabRef#15306) * Cleanups * Refactor PreviewPreferences for resetting and import * Some null checks and migrations * Fix wrong notnull * Fix import * Avoid addAll crash on immutable List * Add forgotten customPreviewLayout * Fix artifact from code iteration * Refactor for consistency * Fix artifact from code iteration * Enhance dummy fallback layout * Try to fix jbang * Apply IDE suggestions * Fix weird checkstyle behaviour * Add default styles * Fix migration tests * Add tests * Small cleanups --------- Co-authored-by: Carl Christian Snethlage <calixtus@users.noreply.github.com> * Fix javadoc markdown artifacts (JabRef#15309) * Closes JabRef#14897 This incorporates all the pending old Javadoc to Markdown changes required after merging JabRef#14891.The following files are changed: 1.AutoCompletionTextInputBinding.java 2.JabRefCliPreferences.java 3.SearchBasedParserFetcher.java 4.StartNewStudyAction.java 1. * 1. * Rsolved mix up of endregion and endRegion.Final one is endregion. 1.File changed-JabRefCliPreferences.java * Rsolved format issue related to line space.Files changed. 1.JabRefCliPreferences.java 2.SearchBasedParserFetcher.java * Files changed. 1.JabRefCliPreferences.java. The following changes are done:- 1.Added // endregion to maintain sync with region:AI And // region Push to application preferences and //region to Git 2.Changed region: to region 3.Changed region: Cleanup to previous ToDo: Cleanup 4.changed endRegion to end region 5.Adjusted dangling // endregion by merging Imported Preference tag(new one) with Other Preferences(old one) * Files changed. 1.JabRefCliPreferences.java. The following changes are done:- 1.Apply IntelliJ formatting * Update CHANGELOG for JabRef#12967 * Apply case-insensitive comparison only to DOI identifiers * Apply IntelliJ code formatting to DuplicateCheck and DuplicateCheckTest * Add tests for case-insensitive DOI duplicate detection * Fix case-insensitive DOI comparison in duplicate detection * fix formatting --------- Signed-off-by: dependabot[bot] <support@github.com> Signed-off-by: subhramit <subhramit.bb@live.in> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Carl Christian Snethlage <50491877+calixtus@users.noreply.github.com> Co-authored-by: Christoph <siedlerkiller@gmail.com> Co-authored-by: Faneesh Juneja <willowstration@gmail.com> Co-authored-by: Subhramit Basu <subhramit.bb@live.in> Co-authored-by: Paul <thecoder777.github@gmail.com> Co-authored-by: Carl Christian Snethlage <calixtus@users.noreply.github.com> Co-authored-by: Mend Renovate <bot@renovateapp.com> Co-authored-by: Nishant Dasgupta <nishant.24bcs10451@sst.scaler.com> Co-authored-by: Mike Zhang <97817030+mikezhanghaozhe@users.noreply.github.com> Co-authored-by: JunWang222 <70090336+JunWang222@users.noreply.github.com> Co-authored-by: AbhijitBhowmick <94289124+AbhijitBhowmick@users.noreply.github.com>

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Some small repairs after Javadoc to Markdown conversion. #14897

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AbhijitBhowmick force-pushed the 14897-fix-javadoctoMarkdown-repairs branch from 6880f85 to 2ededd5 Compare March 10, 2026 01:01

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Stewori reviewed Mar 10, 2026

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calixtus changed the title ~~14897 fix javadocto markdown repairs~~ Fix javadocto markdown artifacts Mar 12, 2026

calixtus changed the title ~~Fix javadocto markdown artifacts~~ Fix javadoc markdown artifacts Mar 12, 2026

AbhijitBhowmick added 5 commits March 13, 2026 08:35

Closes JabRef#14897

68908b3

This incorporates all the pending old Javadoc to Markdown changes required after merging JabRef#14891.The following files are changed: 1.AutoCompletionTextInputBinding.java 2.JabRefCliPreferences.java 3.SearchBasedParserFetcher.java 4.StartNewStudyAction.java 1.

1.

fc5ddb7

Rsolved mix up of endregion and endRegion.Final one is endregion.

5771022

1.File changed-JabRefCliPreferences.java

Rsolved format issue related to line space.Files changed.

cf728d7

1.JabRefCliPreferences.java 2.SearchBasedParserFetcher.java

AbhijitBhowmick force-pushed the 14897-fix-javadoctoMarkdown-repairs branch from 39e8c75 to 9496f9b Compare March 13, 2026 07:37

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github-actions Bot added status: changes-required Pull requests that are not yet complete and removed status: no-bot-comments labels Mar 13, 2026

Files changed.

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1.JabRefCliPreferences.java. The following changes are done:- 1.Apply IntelliJ formatting

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calixtus enabled auto-merge March 15, 2026 16:19

calixtus approved these changes Mar 15, 2026

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Merged via the queue into JabRef:main with commit a4fe918 Mar 15, 2026
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AbhijitBhowmick Mar 11, 2026 • edited Loading Uh oh! There was an error while loading. Please reload this page.

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AbhijitBhowmick commented Mar 9, 2026 •

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