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16 changes: 8 additions & 8 deletions astro.config.mjs
Original file line number Diff line number Diff line change
@@ -1,14 +1,14 @@
// @ts-check
import { defineConfig } from 'astro/config';
import starlight from '@astrojs/starlight';
import tailwindcss from '@tailwindcss/vite';
import rehypeExternalLinks from 'rehype-external-links';
import { externalLinkIcon } from './external-link-icon.js';
import { defineConfig } from "astro/config";
import starlight from "@astrojs/starlight";
import tailwindcss from "@tailwindcss/vite";
import rehypeExternalLinks from "rehype-external-links";
import { externalLinkIcon } from "./external-link-icon.js";

// https://astro.build/config
export default defineConfig({
site: "https://JaneliaSciComp.github.io",
base: "/fileglancer-user-docs",
site: "https://fileglancer-docs.janelia.org",
base: ".",
markdown: {
rehypePlugins: [
[
Expand Down Expand Up @@ -74,4 +74,4 @@ export default defineConfig({
vite: {
plugins: [tailwindcss()],
},
});
});
8 changes: 4 additions & 4 deletions src/content/docs/getting-started/introduction.mdx
Original file line number Diff line number Diff line change
Expand Up @@ -31,7 +31,7 @@ Fileglancer addresses common challenges researchers face when working with large

Ready to start using Fileglancer? Here are your next steps:

1. **Access the platform**: Navigate to [fileglancer.int.janelia.org](https://fileglancer.int.janelia.org) from the Janelia network
2. **Learn navigation**: Start with the [Navigation Guide](/fileglancer-user-docs/workflows/navigation/) to understand how to browse your data
3. **Try sharing**: Follow the [Data Links Guide](/fileglancer-user-docs/workflows/data-links/) to create your first shareable data link
4. **Explore features**: Review the [Features](/fileglancer-user-docs/features/file-browser/) section to understand all available capabilities
1. **Access the platform**: Navigate to [fileglancer.int.janelia.org](https://fileglancer.int.janelia.org) from the Janelia network
2. **Learn navigation**: Start with the [Navigation Guide](../../workflows/navigation/) to understand how to browse your data
3. **Try sharing**: Follow the [Data Links Guide](../../workflows/data-links/) to create your first shareable data link
4. **Explore features**: Review the [Features](../../features/file-browser/) section to understand all available capabilities
6 changes: 3 additions & 3 deletions src/content/docs/getting-started/quick-start.mdx
Original file line number Diff line number Diff line change
Expand Up @@ -163,9 +163,9 @@ alt="Screenshot of the Fileglancer interface, with an arrow pointing to the Conv

Now that you've completed the basics, explore these guides for more detailed workflows:

- **[Navigation Guide](/fileglancer-user-docs/workflows/navigation/)**: Master all navigation features
- **[Data Links Guide](/fileglancer-user-docs/workflows/data-links/)**: Learn advanced sharing options
- **[File Conversion Guide](/fileglancer-user-docs/workflows/file-conversion/)**: Understand the complete conversion process
- **[Navigation Guide](../../workflows/navigation/)**: Master all navigation features
- **[Data Links Guide](../../workflows/data-links/)**: Learn advanced sharing options
- **[File Conversion Guide](../../workflows/file-conversion/)**: Understand the complete conversion process

## Quick Reference

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10 changes: 5 additions & 5 deletions src/content/docs/index.mdx
Original file line number Diff line number Diff line change
Expand Up @@ -6,10 +6,10 @@ hero:
tagline: Browse and share large scientific imaging data with ease
actions:
- text: Get Started
link: /fileglancer-user-docs/getting-started/introduction/
link: ./getting-started/introduction/
icon: right-arrow
- text: Core Workflows
link: /fileglancer-user-docs/workflows/navigation/
link: ./workflows/navigation/
icon: document
variant: minimal
---
Expand Down Expand Up @@ -52,17 +52,17 @@ alt="Screenshot of the Fileglancer interface showing a directory of OME-Zarr dat
<Card title="Navigate Your Data" icon="right-arrow">
Learn how to browse files, save favorites, and efficiently navigate large directory structures.

[Navigation Guide →](/fileglancer-user-docs/workflows/navigation/)
[Navigation Guide →](./workflows/navigation/)
</Card>
<Card title="Share Data Links" icon="external">
Create and manage shareable data links for your datasets with proper access controls.

[Data Links Guide →](/fileglancer-user-docs/workflows/data-links/)
[Data Links Guide →](./workflows/data-links/)
</Card>
<Card title="Request Conversions" icon="setting">
Submit requests for file format conversions and data processing through the integrated help desk system.

[Conversion Guide →](/fileglancer-user-docs/workflows/file-conversion/)
[Conversion Guide →](./workflows/file-conversion/)
</Card>
</CardGrid>

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4 changes: 2 additions & 2 deletions src/content/docs/support/getting-help.md
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Expand Up @@ -27,8 +27,8 @@ For data format conversions and processing requests:
### Documentation

Before contacting support, consult this user guide. Key sections include:
1. [**Quick Start Guide**](/fileglancer-user-docs/getting-started/quick-start/): Basic operations and common workflows
3. [**Troubleshooting**](/fileglancer-user-docs/support/troubleshooting/): Solutions for common problems
1. [**Quick Start Guide**](../../getting-started/quick-start/): Basic operations and common workflows
3. [**Troubleshooting**](../troubleshooting/): Solutions for common problems

### Built-in Help Features

Expand Down