Version 2.0.6610

Released on January 20th, 2025

Download at: https://download.jetbrains.com/biolabs/span/span-2.0.6610.jar

Changes:

• Added --chromosomes parameter to limit analysis to selected chromosomes only
• Added --hmm-snr and --hmm-low parameters to tweak constraints during HMM fitting
  (defaults are optimized for a broad range of ChIP-seq experiments)
• Added --fragmentation and --gap-fragmentation parameters to configure compensation gap
  for tracks with high fragmentation
• Added --clip parameter to configure local signal clipping to refine peaks boundaries