0.9.9 - JetBrains Context CLI

New features

• index and status now pick up git checkouts nested under the repository you point them at, such as vendored clones and submodules, and treat each as its own repository unless .jbcontext.json declares a repositories list or you pass index --revision.

Improvements

• setup-agent --auto now installs subagents for Codex, so a plain setup gets the context-explorer search subagent.
• setup-agent --auto no longer installs skills for Codex; pass --skills to get them.
• dashboard now shows repository-lookup activity, listed under an all repositories row next to search and indexing.
• The MCP find_repositories tool now says when a storage source could not be reached instead of silently returning a partial list.
• analyze --details now opens an HTML report with charts of exploration cost, token trends, and jbcontext usage over time, including the with-and-without comparison previously available through the now-removed analyze --comparison.

Fixes

• The Windows release archive now ships a signed executable.
• Reminder hooks installed with setup-agent --hooks fire again on newer Codex models, including a single shell call that runs several commands.
• setup-agent now replaces an outdated JetBrains Context reminder hook block in your Codex config instead of leaving it live.
• analyze now detects JetBrains Context availability correctly across Codex sessions wired through hooks or the search skill and the latest Junie builds, and no longer counts a plain context command as JetBrains Context usage.