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LFC() and gcate_lfc_batch() results now include log2fc and log2fc_se, the base-2 equivalents of the existing natural-log tau and std columns. Existing statistics, p-values, and discoveries are unchanged.
Changed
Older compatible gcate_lfc_batch() caches are upgraded in memory with the
new log2-scale columns when resumed.
The Python environment now requires NumPy >2. A separate causarray-r
environment supplies R 4.4 and a NumPy-2-compatible reticulate, avoiding
changes to the Python numerical stack for R interoperability.