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Tiff Cropper v1.0

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@Juaco2r Juaco2r released this 27 Feb 13:14
· 33 commits to main since this release
v1.0
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TiffCropper v1.0

First stable public release of TiffCropper, a standalone Windows application for high-resolution ROI extraction from Whole Slide Images (WSI).

Highlights

  • Support for TIFF, OME-TIFF, and NDPI
  • OME-TIFF export with physical size preservation
  • Optional lossless DEFLATE compression
  • BigTIFF output for large regions
  • Pyramid-aware interactive preview
  • Robust fallback strategy for partially corrupted pyramid tiles
  • Fully offline executable (no Python required)

🔬 Designed for Digital Pathology Workflows

TiffCropper enables precise pixel-level cropping while preserving:

  • Resolution metadata (DPI)
  • Physical pixel size (µm per pixel)
  • NDPI scanner metadata (embedded as OME MapAnnotations when exporting OME-TIFF)

The application handles large multi-gigapixel WSIs efficiently using block-based reading and tiled output writing.

📦 Included in this Release

  • TiffCropper.zip → Windows executable package
  • TiffCropper_Protocol_v1.0.pdf → Full user and technical protocol

No installation required.
Simply extract and run TiffCropper.exe.

🖥 System Requirements

  • Windows 10 / 11
  • ≥ 4 GB RAM (≥ 16 GB recommended for large WSI)

📜 License

MIT License
© 2026 Jose Rodriguez-Rojas

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