v1.1.1

No code changes. This release was created to archive the repository and mint a DOI through Zenodo.

v1.1.0 — Abundance–LFC visualization and improved ANCOM-BC2 plotting

Highlights

This release adds a new visualization function for integrating descriptive
taxonomic abundance with ANCOM-BC2 differential-abundance results.

New: make_abundance_lfc_plot()

make_abundance_lfc_plot() combines four aligned panels for a selected
ANCOM-BC2 contrast:

• Average TSS-normalized relative abundance (%) by group, shown as mean ± SE
• ANCOM-BC2 log-fold change with ±1 SE
• Raw p-values
• Adjusted q-values

The function is designed for res, res_pair, res_dunn, res_global, and
res_trend outputs returned by ANCOMBC::ancombc2().

Consistent ANCOM-BC2 result display

• Restored sensitivity and show_all controls to align taxon selection with
  make_heatmap() and make_barplots().
• Log-fold-change bar transparency now follows the same sensitivity logic as
  make_barplots():
  • fully opaque: pseudo-count sensitivity-robust result
  • semi-transparent: result not robust to pseudo-count sensitivity analysis
• Positive and negative log-fold changes use the same red/blue convention as
  existing bar plots.
• Group colors can be supplied externally for abundance panels.

Documentation and package improvements

• Added Roxygen2 documentation for make_abundance_lfc_plot().
• Improved package citation and software acknowledgement guidance.
• Added explicit acknowledgement of ANCOM-BC2 and visualization resources that
  informed package development.

Full Changelog: v1.1.0...v1.1.0

ancombcVizhelper 1.0.3

v1.0.3

Release version 1.0.3

Initial public release of ancombcVizhelper.

Initial public release of ancombcVizhelper.

• Heatmap and bar-plot helpers for ANCOM-BC2 results
• Support for primary (res), global (res_global), pairwise (res_pair),
  Dunnett-type (res_dunn), and trend (res_trend) results
• Structural-zero handling and pseudo-count sensitivity display
• atlas1006 ANCOM-BC2 workflow vignette