Function index

函数一览 · Function index

全部62个函数，按网站“函数参考”的分组排列。每个函数都有中文说明页（每一部分附英文原文对照）和英文帮助页；在R中可以用?函数名查看英文帮助。

All 62 functions, grouped as on the website. Each function has a Chinese page (with the English original of each part) and the English help page (?name in R).

💾 FAO数据 · FAO data

Check for, download and load FAO Global Capture Production releases.

函数 Function	中文说明	English
`check_fao_update()`	检查FAO全球捕捞产量数据的最新版本	Check for the Latest FAO Global Capture Production Release
`download_fao_data()`	下载FAO全球捕捞产量数据的某个版本	Download an FAO Global Capture Production Release
`load_fao_data()`	读取FAO全球捕捞产量数据	Load FAO Global Capture Production Data
`fao_data_info()`	所用FAO数据的信息	Information on the FAO Data Used
`fao_data_dir()`	下载的FAO数据的保存目录	Directory for Downloaded FAO Data

🌊 渔区分析 · Fishing areas

Total catch, main species and main countries of an FAO fishing area.

函数 Function	中文说明	English
`fao_areas()`	FAO主要渔区	FAO Major Fishing Areas
`fishing_area_map()`	FAO主要渔区及其分区地图	Map of an FAO Major Fishing Area and Its Subareas
`fishing_area_data()`	提取指定渔区的数据并绘图（可选）	Extract Data for a Specified Fishing Area and Optionally Generate Plots
`fishing_area_species()`	渔区主要物种分析	Fishing Area Species Analysis
`fishing_area_country()`	渔区主要国家分析	Fishing Area Country Analysis

🐟 物种与国家 · Species and countries

Who catches a species, what a country catches, and a country's global catch.

函数 Function	中文说明	English
`species_country()`	按国家产量排名分析指定物种并绘图	Analyze and Plot Specified Species Data Ranked by Country Production
`country_species()`	分析并绘制某个国家在渔区内的主要捕捞物种	Analyze and Plot the Main Species Caught by a Country in a Fishing Area
`country_analysis()`	分析并绘制某个国家的全球渔获量	Analyze and Plot the Global Catch of a Country

📊 汇总分析 · Summary analyses

Composition, stock status, trends, data quality, diversity and fleets.

函数 Function	中文说明	English
`species_group_composition()`	按物种类群的渔获量组成	Catch Composition by Species Group
`stock_status()`	资源状态图	Stock Status Plots
`peak_trend()`	峰值渔获量与近期趋势	Peak Catch and Recent Trend
`area_overview()`	全部FAO海洋渔区概览	Overview of All FAO Marine Fishing Areas
`data_quality()`	捕捞产量统计的数据质量	Data Quality of the Catch Statistics
`diversity_concentration()`	渔获量的多样性与集中度	Diversity and Concentration of the Catch
`country_group_summary()`	按国家分组的渔获量	Catch by Country Group
`regime_shift()`	主要物种渔获量的同步突变点	Synchronous Breakpoints in the Catch of the Main Species
`coastal_distant()`	沿岸国与远洋捕捞国的渔获量	Catch by Coastal Countries and Distant-Water Fleets

🔬 文献方法分析 · Literature-based analyses

Analyses that follow published methods, each citing its sources.

函数 Function	中文说明	English
`catch_shocks()`	渔获骤变	Catch Shocks
`collapse_analysis()`	渔业崩溃	Fishery Collapses
`catch_synchrony()`	渔获量的同步性与稳定性	Synchrony and Stability of the Catch
`distant_water_profile()`	一个国家的远洋捕捞概况	Distant-Water Profile of a Country
`compare_releases()`	比较两个FAO数据版本	Compare Two FAO Data Releases
`pelagic_demersal()`	中上层/底层渔获比	Pelagic/Demersal Catch Ratio
`fao_pd_groups()`	中上层与底层物种类群	Pelagic and Demersal Species Groups

🌡️ FishBase与温度 · FishBase and temperature

Species traits from FishBase and SeaLifeBase, sea surface temperature, and the mean temperature of the catch.

函数 Function	中文说明	English
`check_fishbase_update()`	检查FishBase和SeaLifeBase的最新版本	Check for the Latest FishBase and SeaLifeBase Releases
`download_fishbase_data()`	下载FishBase和SeaLifeBase数据表	Download FishBase and SeaLifeBase Data
`fishbase_table()`	读取FishBase或SeaLifeBase数据表	Read a FishBase or SeaLifeBase Table
`fishbase_match()`	将FAO物种条目与FishBase、SeaLifeBase匹配	Match FAO Species Items to FishBase and SeaLifeBase
`fishbase_sources()`	FishBase数据的来源、许可协议和匹配规则	Sources, Licences and Matching Rules of the FishBase Data
`fao_sst_products()`	海表温度数据产品	Sea Surface Temperature Products
`download_sst_data()`	下载海表温度数据产品	Download a Sea Surface Temperature Product
`fao_area_sst()`	FAO主要渔区的海表温度	Sea Surface Temperature of the FAO Major Fishing Areas
`mean_temperature_catch()`	渔获平均温度	Mean Temperature of the Catch

📉 CMSY++资源评估 · CMSY++ stock assessment

Catch-only stock assessment with the bundled CMSY++ code, FishBase priors and JAGS set up for the operating system.

函数 Function	中文说明	English
`cmsy_area()`	一次完成某个渔区主要物种的CMSY++评估	Run CMSY++ for the Main Species of a Fishing Area
`cmsy_system()`	检查本机的CMSY++运行环境并选择相应设置	Check the Computer for CMSY++ and Choose the Settings for It
`cmsy_setup()`	安装JAGS和CMSY++所需的R包	Install JAGS and the R Packages Needed by CMSY++
`cmsy_jags_versions()`	各R版本对应的JAGS和rjags版本	Which JAGS Version Goes with Which R Version
`cmsy_download_jags()`	下载适合本机的JAGS安装程序	Download the JAGS Installer that Matches This Computer
`cmsy_install_jags()`	下载并打开JAGS安装程序	Download and Open the JAGS Installer
`cmsy_sources()`	CMSY++及其所需软件的来源	Sources of CMSY++ and the Software It Needs
`cmsy_priors()`	来自FishBase和SeaLifeBase的CMSY++先验	FishBase and SeaLifeBase Priors for CMSY++
`cmsy_input()`	将FAO渔获数据转换为CMSY++输入文件	Prepare FAO Catch Data for CMSY++
`cmsy_defaults()`	CMSY++设置及其默认值	Settings of CMSY++ and Their Defaults
`cmsy_run()`	用FAO渔获数据运行CMSY++	Run CMSY++ on FAO Catch Data
`cmsy_plot()`	CMSY++结果图表	Charts of CMSY++ Results
`cmsy_mcmc()`	CMSY++运行的MCMC设置与收敛诊断	MCMC Settings and Convergence of CMSY++ Runs
`cmsy_forecast()`	不同捕捞情景下的CMSY++预测	Project CMSY++ Results under Fishing Scenarios
`cmsy_compare()`	比较多次CMSY++运行结果，或与其他评估比较	Compare CMSY++ Runs, or CMSY++ with Other Assessments
`cmsy_tables()`	报告用的CMSY++先验参数表和结果表	Tables of CMSY++ Priors and Results for Reports

📝 报告 · Reports

A Word report of a fishing area, in Chinese or English, written from the results.

函数 Function	中文说明	English
`fao_report()`	FAO渔区评估报告	Assessment Report of an FAO Fishing Area

🧩 Extensions: other FAO datasets · Extensions: other FAO datasets

函数 Function	中文说明	English
`load_fao_divisions()`	按分区的渔获量：区域渔业组织的FAO数据	Catch by Division: FAO Data of the Regional Fishery Bodies
`load_fao_trade()`	水产品贸易：FAO数据	Trade of Aquatic Products: FAO Data
`catch_trade()`	以捕捞为主的物种类群的渔获量与贸易	Catch and Trade of the Species Groups Mostly Caught
`fao_capture_groups()`	以捕捞为主（而非养殖）的物种类群	Species Groups Mostly Caught, Not Farmed
`load_fao_employment()`	渔业与水产养殖就业：FAO数据	Employment in Fisheries and Aquaculture: FAO Data
`employment_summary()`	渔业与水产养殖逐年就业情况	Employment in Fisheries and Aquaculture by Year
`catch_per_fisher()`	人均渔获	Catch per Fisher

🎨 设置与语言 · Settings and language

Chart style, map projection, colours, fonts and Chinese names.

函数 Function	中文说明	English
`fao_settings()`	图表、地图和输出的设置	Settings for Charts, Maps and Output
`fao_font()`	图表文字的字体	Font Used for Chart Text
`fao_translate()`	翻译FAO的国家、物种或渔区名称	Translate FAO Country, Species or Fishing Area Names

faofishingreport · 网站 Website · GitHub · 问题反馈 Issues · GPL-3 · 本包与FAO无关联，数据来源为FAO。This package is not affiliated with FAO; the data come from FAO.

faofishingreport 1.0.0

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Function index

函数一览 · Function index

💾 FAO数据 · FAO data

🌊 渔区分析 · Fishing areas

🐟 物种与国家 · Species and countries

📊 汇总分析 · Summary analyses

🔬 文献方法分析 · Literature-based analyses

🌡️ FishBase与温度 · FishBase and temperature

📉 CMSY++资源评估 · CMSY++ stock assessment

📝 报告 · Reports

🧩 Extensions: other FAO datasets · Extensions: other FAO datasets

🎨 设置与语言 · Settings and language

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