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MDAnalysis is primarily a library that allows the user to write their own code. In order to make the transition from using ready-made scripts or tools to writing your own, tutorials are available.
- Introductory MDAnalysis Tutorial: covers installation, important data structures, trajectory analysis, and using algorithms in MDAnalysis.analysis
- A simple tutorial on analysing membrane protein simulations by Phil Fowler
- MDAnalysis Workshop at the 2015 CECAM Macromolecular simulation software workshop: see the setup instructions and then follow the two Jupyter notebooks MDAnalysis_Workshop_Part_1.ipynb and MDAnalysis_Workshop_Part_2.ipynb
- SPIDAL: MDAnalysis + Midas tutorial shows how to use radical.pilot to parallelize MDAnalysis scripts; the example is Path Similarity Analysis.