SeuratConverter

Description

SeuratConverter is an R package to convert between Seurat objects and AnnData objects.

Installation and Usage :

Install from CRAN-Compatible Source:

install.packages(c("Seurat", "Matrix", "hdf5r"))
devtools::install_github("https://github.com/MJBioInfo/SeuratConverter")

Convert Seurat → H5AD:

library(SeuratConverter)
seurat_to_anndata(
  seurat_obj = pbmc_small,
  output_file = "pbmc.h5ad",
  reductions = c("pca", "umap")
)

Convert H5AD → Seurat:

seurat_obj <- anndata_to_seurat("pbmc.h5ad", output_file = "pbmc.rds" , assay_name = "RNA", layers = c("counts", "data"), reductions = NULL)