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Releases: MPUSP/snakemake-ms-proteomics

Release list

v1.1.1

v1.1.1 Latest
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@github-actions github-actions released this 25 Sep 10:18
v1.1.1
bb54855
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1.1.1 (2026-09-25)

Bug Fixes

  • readmes, duplicated html tags (f5602f1)
  • readmes, duplicated html tags (b7b4c96)
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v1.1.0

v1.1.0

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@github-actions github-actions released this 14 Aug 11:28
v1.1.0
16038a5
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1.1.0 (2026-08-14)

Features

  • changes to accommodate DIA analysis; separate fragpipe download and run (96b5de3)
  • major update of all rules and envs; added modularization (32a0912)
  • pixi for env setup (e5db1d1)
  • update github workflows (e4c1b87)
  • update github workflows; closes #9 (d4414e6)

Bug Fixes

  • figure updates, flexibility if no constrasts are available (d36d54a)
  • handle fragpipe cores (ed8c87f)
  • linting (cd49922)
  • remove duplicated terminal setting (83ceb96)
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v1.0.0

v1.0.0

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@github-actions github-actions released this 30 Jan 14:06
v1.0.0
1a65950
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Learn about vigilant mode.

1.0.0 (2025-01-30)

Features

  • added authors, description, and reference section. closes #2 (c23716b)
  • added example test files (722c721)
  • added github actions (83dcc44)
  • added log file export for all modules, closes #1 (94c1a5a)
  • added module for R MSstats package (3a99ae1)
  • added module to automatically retrieve proteome fasta file (aa00ca9)
  • added module to clean up temp files after pipeline execution; fixes #1 (785f877)
  • added module to generate HTML report from R markdown template (d239316)
  • added module to sent email reports; closes #8 (04037a6)
  • added more options to decoypyrat (89db96c)
  • added new module to check sample sheet (b48cac4)
  • added possibility to submit contrasts with samplesheet, fixes #3 (2f952e6)
  • added protein summary tables to email report (d9c2512)
  • added rule to gather module and env log files; env info added to report (f9b5897)
  • added schmematic overview of pipeline; closes #2 (df4aec0)
  • added support for PDF export, closes #7 (ef5f75e)
  • added support to select workflow from sample type (11dd081)
  • added yml config for sm workflow catalog (7cce96d)
  • change license to MIT (d80702c)
  • finished building basic HTML report with many different QC figures (b9bd8c7)
  • improved report, QC figures and documentation (35c901a)
  • major change in organisation, adding conda env definitions (6def601)
  • major update to repo structure and dependencies (df35acc)
  • streamlined snakefile regarding in/output paths, fixes #6 (c83e9f8)
  • update catalog yml and snakemake options (9198719)

Bug Fixes

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