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PyZebArdYolo 1.3.0

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@MarkSant MarkSant released this 02 Oct 00:14
· 2 commits to main since this release
1.3.0
7cbace0

Release accompanying the submission of the PyZebArdYolo paper (Journal of
Neuroscience Methods). No change to the acquisition software or firmware.

Added

  • latency/: logs of the two closed-loop latency sessions (lat1_1, lat1_2), the
    optical read-out script, the summary script that produces every latency value of
    the paper, integrity checks and Figure 9 (vector PDF). The session videos are
    archived separately on Zenodo (https://doi.org/10.5281/zenodo.23092482).
  • validation/analysis/agreement_stats.py: single implementation of ICC(A,1) with
    the exact McGraw & Wong 95% CI, Bland–Altman and proportional-bias statistics.
  • validation/analysis/03_agreement_summary.py: pooled Table 1, Table 2 diagnostics
    (% within LoA, proportional-bias slope, Breusch–Pagan), % of frames within 20/30 px,
    metric conversion and recall summary.
  • validation/analysis/04_figures.py: Figures 6–8 as vector PDF and 600-dpi PNG.
  • LICENSES/: full texts of MIT, AGPL-3.0, CERN-OHL-S-2.0 and CC-BY-4.0.

Changed

  • 01_pairing_metrics.py uses agreement_stats.py (exact CIs at full precision
    instead of pingouin's two-decimal CIs); NaN rows no longer propagate into ICCs.
  • Results regenerated: summary_pooled.csv (exact CIs), metrics_per_video.csv
    (CEST_Dia5 no longer NaN), recall.csv, icc_per_video_*.csv, mixed_model.txt
    and the paired coordinates, all regenerated from the current annotation files
    (the previous paired files of CEST_Dia5 contained one empty pair from an empty
    manual row; N is now 4114 for PyZebArdYolo and 4200 for ZebTrack).
  • READMEs, CITATION.cff (new paper title, authors, journal, concept DOI) and
    version metadata updated.

Removed

  • Note about the unrelated DRerio LogAI software and its INPI registration
    (README, NOTICE §0): it does not concern this repository.

Session videos of the latency measurements: https://doi.org/10.5281/zenodo.23092482

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