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Analyses

Mathilda Stigenberg edited this page Apr 8, 2022 · 60 revisions

FASTQC

The rawdata obtained were quality checked by using the software FastQC. The commands used for this step can be seen in the code page. Thereafter, a scaffold was chosen to continue the other analyses with. The scaffold 6 was chosen and the quality reports for that scaffold were downloaded.

ej trimma på illumina, trimma de som är otrimmade . använd allt sen vid mapping. välj bara en scaffold.

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