LBM-Suite2p-Python-v2.5.2

Changelog

v2.5.2 (2025-01-05)

Dependencies

• Bump mbo_utilities to v2.5.0

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v2.5.1 (2025-01-03)

API Changes

• Rename planes → num_zplanes (with deprecation warning)
• Rename roi → roi_mode (with deprecation warning)
• Rename num_frames → num_timepoints (with deprecation warning)
• Align API with mbo_utilities metadata conventions

Improvements

• Use detect_stack_type() for automatic stack detection
• Use compute_num_timepoints() for accurate volume counting
• Store stack_type, num_timepoints, num_zplanes in ops

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v2.4.0 (2025-12-11)

New Features

• Cellpose Integration: Full cellpose 2D/3D segmentation support
• Suite2p/Cellpose format conversion module
• Cellpose GUI wrapper with automatic format conversion
• Grid search notebook for parameter optimization
• Processing time logging

Improvements

• Better volumetric ROI maps with regional planar masks
• Per-filter exclusion visualization and metadata tracking
• CLI module with full ops parameter exposure
• Vcorr (variance correlation) for plots

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v2.3.0 (2025-12-02)

New Features

• pipeline() function: New unified entry point for all processing
• Volume viewer for 3D visualization
• Better planar and volumetric outputs

Improvements

• Auto-detect input type (files, directories, arrays)
• Auto-extract metadata (frame rate, pixel resolution)
• Multi-plane processing with automatic z-plane handling
• Multi-ROI stitching or splitting

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v2.2.1 (2025-11-24)

Bug Fixes

• Fix projection errors when bypassing registration
• Fix do_reg overwrite bug
• Suite2p bugfixes

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v2.1.1 (2025-11-17)

Improvements

• Better traces handling

Bug Fixes

• Various stability fixes

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v2.1.0 (2025-11-12)

New Features

• Multi-channel registration: Dual-channel support with align_by_chan
• Structural vs functional registration flagging

Improvements

• Optimized lazy imports
• Documentation updates
• Ruff linting integration

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v2.0.3 - v2.0.4 (2025-10-22)

Bug Fixes

• Raw binary validation
• Indentation error fix

What's Changed

• bump v2.0.1 by @FlynnOConnell in #27
• 2.0.1: bugfixes, update nbs by @FlynnOConnell in #28
• Optimize lazy imports, small bugfixes by @FlynnOConnell in #29
• bump v2.0.2 by @FlynnOConnell in #30
• feat: structural and functional registration by @FlynnOConnell in #31
• Multi-channel registration + bugfixes by @FlynnOConnell in #32
• bump v2.0.3 by @FlynnOConnell in #33
• patch: validate raw binaries by @FlynnOConnell in #35
• patch indentation error, bin validation by @FlynnOConnell in #36
• patch v2.0.4: bin validation by @FlynnOConnell in #37
• Multichannel registration updates, bugfixes by @FlynnOConnell in #38
• Prep v2.1.0: docs, bugfixes by @FlynnOConnell in #39
• Bump v2.1.0: ruff link/format by @FlynnOConnell in #40
• Bump v2.1.1: bugfixes, better traces handling by @FlynnOConnell in #41
• Patch registration flag overwritten by @FlynnOConnell in #42
• fix projection errors when bypassing registration by @FlynnOConnell in #43
• Add sutie2p bugfixes, vcorr for plots, missing files by @FlynnOConnell in #44
• Bump v2.2.1 by @FlynnOConnell in #45
• add volume viewer, consolidate s2p (WIP) by @FlynnOConnell in #46
• bugfixes, cp-sam nbs, improve docs by @FlynnOConnell in #55
• cp-sam updates, numpy array wrapper, notebook updates by @FlynnOConnell in #56
• update iscell filtering example by @FlynnOConnell in #57
• cellpose integration, nb updates, better metadata and grid search by @FlynnOConnell in #58
• Cellpose v suite2p by @FlynnOConnell in #59
• v2.4.0: Cellpose, suite2p integration, bugfixes, optimizations by @FlynnOConnell in #60
• lock + deps for 2.4.0 by @FlynnOConnell in #61
• Vol outputs by @FlynnOConnell in #62
• strip ipynb from notebooks, better volumetric roi map, regional planar masks by @FlynnOConnell in #63
• fix readme images and formatting by @FlynnOConnell in #64
• pipeline/overwrite behavior to user guide by @FlynnOConnell in #65
• update api to match mbo_utilities, num_timepoints, num_zplanes etc. by @FlynnOConnell in #66
• update readme, main funcs, new traces by @FlynnOConnell in #67
• Update utils api by @FlynnOConnell in #68
• bump v2.5.1 by @FlynnOConnell in #69
• bump mbo_utilities-v2.5.0 by @FlynnOConnell in #70
• Bump v2.5.2 by @FlynnOConnell in #71

Full Changelog: v2.0.1...v2.5.2