This repository contains the source code and the results from my Bioinformatics Projects, developed in Python, during the Masters degree.
In here it possible to find fucntions that allow to:
--> Generate staphylococcus phages datasets in .csv format (however these functions can be changed in order to generate datasets for other organims).
--> Find specific proteins inside the genome and generate .txt files conatining the genomes with the wanted proteins.
--> Get the accession genomes that do not have the wanted proteins inseide the previous generated dataset.
--> Get proteins nucleotide sequences into a .fasta file, based on their id or on their location within the genome.
--> Performing multi-sequence aligments.
--> Draw phylogenetic trees from .dnd files.
--> Draw cladrograms from .aln --> .nex files.
--> Identify SNP from .vcf files.
Script files are located inside the Scripts folder.