Fix publish workflow while preserving all-format rendering

[Copilot]

The publish pipeline was failing in Quarto Publish. This update keeps full-project rendering (including all configured formats) and aligns workflow setup with the working approach used in d-morrison/rme.

• Scope of change

  • Restored the publish render step to full project render (no HTML-only override).
  • Updated checkout in .github/workflows/publish.yml to use recursive submodules.
  • Updated Quarto setup to use quarto-dev/quarto-actions/setup@HEAD and pass GH_TOKEN.

• Workflow behavior

  • Quarto Publish now continues to render all configured formats.
  • Workflow setup is aligned with rme to improve reliability before render/deploy.

• Patch

  - name: Check out repository
    uses: actions/checkout@v5
    with:
      submodules: recursive
  
  - name: Set up Quarto
    uses: quarto-dev/quarto-actions/setup@HEAD
    env:
      GH_TOKEN: ${{ secrets.GITHUB_TOKEN }}
    with:
      tinytex: true
  
  - name: Render
    uses: quarto-dev/quarto-actions/render@v2

[!WARNING]

[Copilot]

Pull request overview

Fixes the GitHub Actions Quarto Publish workflow so it can publish successfully while preserving full-project rendering across all configured formats, and updates the workflow setup to match the approach used in d-morrison/rme.

Changes:

• Updated repository checkout to include Git submodules (submodules: recursive).
• Switched Quarto setup action from a versioned release to @HEAD and passed GH_TOKEN via step env.

[github-actions]

PR Preview Action v1.8.1
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2026-05-12 20:49 PDT