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v0.2.0

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@mjohnpayne mjohnpayne released this 03 Nov 05:23
· 29 commits to main since this release
v0.2.0
91fd2b0
  • Added target generation function to produce a fasta file that can be used in downstream mapping analysis. Sequencing data generated by capture using a given panel design can be mapped to the target file to determine the presence of target organisms. i.e. using castanet
  • Target generation is currently in development!!
  • Added remove_outliers flag. This will cluster input sequences at a low cutoff (i.e. 80% identity) then remove sequences that are in singleton clusters. The rationale is that these are likely to be another species or possibly artificially modified (i.e. codon optimised). caution should be used if you have a sparse, diverse genome collection.

Full Changelog: v0.1.4...v0.2.0

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