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v0.9.0

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@github-actions github-actions released this 15 Jul 05:57
· 7 commits to main since this release
f4c7ac6

Added

  • Batch AF model fast parser: add experimental zsasa batch --af-model-fast for AlphaFold-like mmCIF batches. The fast path preserves multiple chains and atom metadata, and falls back to the generic parser for unsupported layouts.
  • Batch input I/O selection: add --input-io=auto|mmap|read to compare or select file input strategies where supported.
  • Batch stage profiling: add --profile-stages with --timing to report aggregate read/parse, classifier, and JSONL write times.

Changed

  • Batch JSONL streaming: buffer normal-sized JSONL records while streaming large records directly to avoid regressions for PDB batches with large atom-area payloads.