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Handle missing output files when list of files is returned in Arvados…#111

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golharam merged 1 commit into
NGS360:mainfrom
kmavrommatis:handle-missing-output-files-in-array-output
Jun 30, 2026
Merged

Handle missing output files when list of files is returned in Arvados…#111
golharam merged 1 commit into
NGS360:mainfrom
kmavrommatis:handle-missing-output-files-in-array-output

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@kmavrommatis

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When output ports of a pipeline are lists the current version of the function is looking for the key 'location' and returns it.
If a file is null (e.g. one of the list elements is missing) it crashes.
The update ignores null elements of the list.

@golharam
golharam merged commit 95c443e into NGS360:main Jun 30, 2026
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2 participants