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add initial configs for perf testing on ESM2 in JET (bionemo2)#497

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Jan 7, 2025
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add initial configs for perf testing on ESM2 in JET (bionemo2)#497
dorotat-nv merged 50 commits into
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@dorotat-nv dorotat-nv commented Dec 4, 2024

Adding ESM2 650M conv + perf partial configs for benchmarking with required changes

@dorotat-nv dorotat-nv changed the title add partial configs for perf testing on ESM2 in JET (bionemo2) add initial configs for perf testing on ESM2 in JET (bionemo2) Dec 4, 2024
Comment thread ci/benchmarks/partial-conv/esm2_pretrain.yaml Outdated
Comment thread ci/benchmarks/partial-conv/esm2_pretrain.yaml
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/build-ci

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Looks good, please mirror the changes for ESM2 train in both Geneformer and the generic train entrypoint used by pydantic: bionemo-llm/src/bionemo/llm/train.py

@skothenhill-nv , added required changes, at least the ones I am aware of

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thanks for updating the pydantic paths! Love the new model valdiator.

@dorotat-nv dorotat-nv enabled auto-merge (squash) December 12, 2024 16:30
@dorotat-nv dorotat-nv self-assigned this Dec 12, 2024
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dorotat-nv and others added 2 commits December 16, 2024 19:16
@dorotat-nv dorotat-nv force-pushed the dorotat/esm2-perf-jet-bionemo2 branch from 6876628 to d36a16d Compare January 6, 2025 14:50
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Signed-off-by: dorotat-nv <dorotat@nvidia.com>
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@dorotat-nv dorotat-nv merged commit 5eddee1 into main Jan 7, 2025
@dorotat-nv dorotat-nv deleted the dorotat/esm2-perf-jet-bionemo2 branch January 7, 2025 15:55
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4 participants