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pin cdifflib version#593

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pstjohn merged 1 commit into
NVIDIA-BioNeMo:mainfrom
pstjohn:pstjohn/cdifflib-pin
Jan 13, 2025
Merged

pin cdifflib version#593
pstjohn merged 1 commit into
NVIDIA-BioNeMo:mainfrom
pstjohn:pstjohn/cdifflib-pin

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@pstjohn pstjohn commented Jan 13, 2025

Description

Pins the version of cdifflib to avoid a build failure. See mduggan/cdifflib#13

Type of changes

  • Bug fix (non-breaking change which fixes an issue)
  • New feature (non-breaking change which adds functionality)
  • Refactor
  • Documentation update
  • Other (please describe):

CI Pipeline Configuration

Configure CI behavior by checking relevant boxes below. This will automatically apply labels.

Note

By default, the notebooks validation tests are skipped unless explicitly enabled.

Usage

TODO: Add code snippet

Pre-submit Checklist

  • I have tested these changes locally
  • I have updated the documentation accordingly
  • I have added/updated tests as needed
  • All existing tests pass successfully

Signed-off-by: Peter St. John <pstjohn@nvidia.com>
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pstjohn commented Jan 13, 2025

/build-ci

@pstjohn pstjohn enabled auto-merge (squash) January 13, 2025 15:49
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codecov-commenter commented Jan 13, 2025

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 88.78%. Comparing base (c691df2) to head (afc57e2).
⚠️ Report is 596 commits behind head on main.

Additional details and impacted files
@@            Coverage Diff             @@
##             main     #593      +/-   ##
==========================================
+ Coverage   87.73%   88.78%   +1.04%     
==========================================
  Files          89       81       -8     
  Lines        5758     5027     -731     
==========================================
- Hits         5052     4463     -589     
+ Misses        706      564     -142     

see 9 files with indirect coverage changes

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@pstjohn pstjohn merged commit 2e90bf5 into NVIDIA-BioNeMo:main Jan 13, 2025
pstjohn added a commit to pstjohn/bionemo-framework that referenced this pull request Jan 14, 2025
This reverts commit 2e90bf5.

Signed-off-by: Peter St. John <pstjohn@nvidia.com>
pstjohn added a commit that referenced this pull request Jan 14, 2025
This reverts commit 2e90bf5.

### Description
We don't need this anymore (assuming tests pass with the new version)
thanks to quick action here: mduggan/cdifflib#13

### Type of changes
<!-- Mark the relevant option with an [x] -->

- [ ]  Bug fix (non-breaking change which fixes an issue)
- [ ]  New feature (non-breaking change which adds functionality)
- [ ]  Refactor
- [ ]  Documentation update
- [ ]  Other (please describe):

### CI Pipeline Configuration
Configure CI behavior by checking relevant boxes below. This will
automatically apply labels.

- [ ]
[SKIP_CI](https://github.com/NVIDIA/bionemo-framework/blob/main/docs/docs/user-guide/contributing/contributing.md#skip_ci)
- Skip all continuous integration tests
- [ ]
[INCLUDE_NOTEBOOKS_TESTS](https://github.com/NVIDIA/bionemo-framework/blob/main/docs/docs/user-guide/contributing/contributing.md#include_notebooks_tests)
- Execute notebook validation tests in pytest

> [!NOTE]
> By default, the notebooks validation tests are skipped unless
explicitly enabled.

### Usage
<!--- How does a user interact with the changed code -->
```python
TODO: Add code snippet
```

### Pre-submit Checklist
<!--- Ensure all items are completed before submitting -->

 - [ ] I have tested these changes locally
 - [ ] I have updated the documentation accordingly
 - [ ] I have added/updated tests as needed
 - [ ] All existing tests pass successfully

Signed-off-by: Peter St. John <pstjohn@nvidia.com>
sichu2023 pushed a commit that referenced this pull request Jan 17, 2025
This reverts commit 2e90bf5.

### Description
We don't need this anymore (assuming tests pass with the new version)
thanks to quick action here: mduggan/cdifflib#13

### Type of changes
<!-- Mark the relevant option with an [x] -->

- [ ]  Bug fix (non-breaking change which fixes an issue)
- [ ]  New feature (non-breaking change which adds functionality)
- [ ]  Refactor
- [ ]  Documentation update
- [ ]  Other (please describe):

### CI Pipeline Configuration
Configure CI behavior by checking relevant boxes below. This will
automatically apply labels.

- [ ]
[SKIP_CI](https://github.com/NVIDIA/bionemo-framework/blob/main/docs/docs/user-guide/contributing/contributing.md#skip_ci)
- Skip all continuous integration tests
- [ ]
[INCLUDE_NOTEBOOKS_TESTS](https://github.com/NVIDIA/bionemo-framework/blob/main/docs/docs/user-guide/contributing/contributing.md#include_notebooks_tests)
- Execute notebook validation tests in pytest

> [!NOTE]
> By default, the notebooks validation tests are skipped unless
explicitly enabled.

### Usage
<!--- How does a user interact with the changed code -->
```python
TODO: Add code snippet
```

### Pre-submit Checklist
<!--- Ensure all items are completed before submitting -->

 - [ ] I have tested these changes locally
 - [ ] I have updated the documentation accordingly
 - [ ] I have added/updated tests as needed
 - [ ] All existing tests pass successfully

Signed-off-by: Peter St. John <pstjohn@nvidia.com>
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4 participants