fix: attempts to update geneformer notebooks

[jomitchellnv]

Description

Type of changes

• Bug fix (non-breaking change which fixes an issue)
• New feature (non-breaking change which adds functionality)
• Refactor
• Documentation update
• Other (please describe):

CI Pipeline Configuration

Configure CI behavior by applying the relevant labels:

• SKIP_CI - Skip all continuous integration tests
• INCLUDE_NOTEBOOKS_TESTS - Execute notebook validation tests in pytest
• INCLUDE_SLOW_TESTS - Execute tests labelled as slow in pytest for extensive testing

Note

By default, the notebooks validation tests are skipped unless explicitly enabled.

Usage

TODO: Add code snippet

Pre-submit Checklist

• I have tested these changes locally
• I have updated the documentation accordingly
• I have added/updated tests as needed
• All existing tests pass successfully

[skothenhill-nv]

looks good

[copy-pr-bot]

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[pstjohn]

/ok to test

[pstjohn]

/ok to test

[codecov-commenter]

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 84.15%. Comparing base (82c4b13) to head (9029efc).
⚠️ Report is 479 commits behind head on main.

Additional details and impacted files

@@           Coverage Diff           @@
##             main     #745   +/-   ##
=======================================
  Coverage   84.15%   84.15%           
=======================================
  Files         136      136           
  Lines        8529     8529           
=======================================
  Hits         7178     7178           
  Misses       1351     1351           

see 1 file with indirect coverage changes

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