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fixing vulnerabilities: setuptools and tornado#902

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dorotat-nv merged 2 commits into
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dorota/fix-vulnerab-setuptools-tornado
May 30, 2025
Merged

fixing vulnerabilities: setuptools and tornado#902
dorotat-nv merged 2 commits into
mainfrom
dorota/fix-vulnerab-setuptools-tornado

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Description

Fixing CVE vunlerabilities:
GHSA-5rjg-fvgr-3xxf
GHSA-7cx3-6m66-7c5m

Type of changes

  • Bug fix (non-breaking change which fixes an issue)
  • New feature (non-breaking change which adds functionality)
  • Refactor
  • Documentation update
  • Other (please describe):

CI Pipeline Configuration

Configure CI behavior by applying the relevant labels:

Note

By default, the notebooks validation tests are skipped unless explicitly enabled.

Authorizing CI Runs

We use copy-pr-bot to manage authorization of CI
runs on NVIDIA's compute resources.

  • If a pull request is opened by a trusted user and contains only trusted changes, the pull request's code will
    automatically be copied to a pull-request/ prefixed branch in the source repository (e.g. pull-request/123)
  • If a pull request is opened by an untrusted user or contains untrusted changes, an NVIDIA org member must leave an
    /ok to test comment on the pull request to trigger CI. This will need to be done for each new commit.

Usage

TODO: Add code snippet

Pre-submit Checklist

  • I have tested these changes locally
  • I have updated the documentation accordingly
  • I have added/updated tests as needed
  • All existing tests pass successfully

@dorotat-nv
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/ok to test 20dad92

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codecov-commenter commented May 30, 2025

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 84.19%. Comparing base (eaded7e) to head (bada8f1).
⚠️ Report is 409 commits behind head on main.

Additional details and impacted files
@@            Coverage Diff             @@
##             main     #902      +/-   ##
==========================================
+ Coverage   84.18%   84.19%   +0.01%     
==========================================
  Files         142      142              
  Lines        8943     8943              
==========================================
+ Hits         7529     7530       +1     
+ Misses       1414     1413       -1     

see 1 file with indirect coverage changes

🚀 New features to boost your workflow:
  • 📦 JS Bundle Analysis: Save yourself from yourself by tracking and limiting bundle sizes in JS merges.

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/ok to test bada8f1

@dorotat-nv dorotat-nv enabled auto-merge May 30, 2025 15:47
@dorotat-nv dorotat-nv added this pull request to the merge queue May 30, 2025
Merged via the queue into main with commit 73c8003 May 30, 2025
14 checks passed
@dorotat-nv dorotat-nv deleted the dorota/fix-vulnerab-setuptools-tornado branch May 30, 2025 17:09
camirr-nv pushed a commit that referenced this pull request Jun 26, 2025
### Description
Fixing CVE vunlerabilities:
GHSA-5rjg-fvgr-3xxf
GHSA-7cx3-6m66-7c5m

### Type of changes
<!-- Mark the relevant option with an [x] -->

- [ ]  Bug fix (non-breaking change which fixes an issue)
- [ ]  New feature (non-breaking change which adds functionality)
- [ ]  Refactor
- [ ]  Documentation update
- [ ]  Other (please describe):

### CI Pipeline Configuration
Configure CI behavior by applying the relevant labels:

-
[SKIP_CI](https://github.com/NVIDIA/bionemo-framework/blob/main/docs/docs/user-guide/contributing/contributing.md#skip_ci)
- Skip all continuous integration tests
-
[INCLUDE_NOTEBOOKS_TESTS](https://github.com/NVIDIA/bionemo-framework/blob/main/docs/docs/user-guide/contributing/contributing.md#include_notebooks_tests)
- Execute notebook validation tests in pytest
-
[INCLUDE_SLOW_TESTS](https://github.com/NVIDIA/bionemo-framework/blob/main/docs/docs/user-guide/contributing/contributing.md#include_slow_tests)
- Execute tests labelled as slow in pytest for extensive testing

> [!NOTE]
> By default, the notebooks validation tests are skipped unless
explicitly enabled.

#### Authorizing CI Runs

We use
[copy-pr-bot](https://docs.gha-runners.nvidia.com/apps/copy-pr-bot/#automation)
to manage authorization of CI
runs on NVIDIA's compute resources.

* If a pull request is opened by a trusted user and contains only
trusted changes, the pull request's code will
automatically be copied to a pull-request/ prefixed branch in the source
repository (e.g. pull-request/123)
* If a pull request is opened by an untrusted user or contains untrusted
changes, an NVIDIA org member must leave an
`/ok to test` comment on the pull request to trigger CI. This will need
to be done for each new commit.

### Usage
<!--- How does a user interact with the changed code -->
```python
TODO: Add code snippet
```

### Pre-submit Checklist
<!--- Ensure all items are completed before submitting -->

 - [ ] I have tested these changes locally
 - [ ] I have updated the documentation accordingly
 - [ ] I have added/updated tests as needed
 - [ ] All existing tests pass successfully

Signed-off-by: Ubuntu <camirr@nvidia.com>
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5 participants