Skip to content

v0.8.1: Fixes to core-gene alignment and user input improvements

Choose a tag to compare

View all tags
@NickJD NickJD released this 30 Sep 02:21
· 34 commits to main since this release
v0.8.1
b1a6be0

Version v0.8.1 includes small but important fixes to the core-gene alignment system and a few user option improvements.

  • Group-Splitter now handles CD-HIT .clstr files correctly as there are slight differences between cd-hit and cd-hit-est (aa/dna) in how the pident's are reported.
  • Group-Splitter now requires the user to state whether the input is DNA or AA.
  • There was a bug where sometimes 'all' FASTA files are included in the core-gene alignment resulting in very odd alignments.
  • User options in PyamilySeq now take the -t THREADS parameter and passes it to CD-HIT and MAFFT.
Assets 2
Loading