Agent - #166
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…sions. Introduce scarf[agent], decide/check_runtime/load_env, and isolation tests so later ingest and reanalysis stages can call a validated structured-choice primitive.
Keep imports deterministic: block prenorm-only H5AD unless matrixKey is forced, and require an explicit HTO vs ADT choice when Antibody Capture names look like hashtags.
…nding. Label cell metadata domains and coefficients, collapse same-domain aliases, and report design-table association with an intercept-aware estimability check that skips technicals varying within the observation unit.
Introduce Ensembl-backed species/family observation with catalogSuspect warnings, and drop constant columns plus invalid finer independent units so design confounding stays general without clustering metadata. Also fix UTF-8 cell metadata, biotype assay-split gating, and decide() coercion for live H5AD runs.
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This PR introduces the optional
scarf.agentworkflow for evidence-grounded single-cell data preparation and characterization.scarf[agent]extra.LLM use is limited to selecting among deterministic, precomputed evidence. Core Scarf remains independent of agent dependencies and can be imported without installing the optional extra.