v2.4.0

Most changes are fixes and improvements for robustness, and include ica-label, reports, plotting, etc.

What's Changed

• Release v2.3.0 by @matsvanes in #408
• EEG Example by @cgohil8 in #405
• Fixed bug plotting parcellated data PSD. by @cgohil8 in #410
• Preprocessing fixes by @matsvanes in #412
• Fix indentation in batch.py by @HQian96 in #419
• Fixed for Yale OSL workshop by @matsvanes in #420

Full Changelog: v2.3.1...v2.4.0

v2.3.1

Version fixes only

v2.3.0

This release upgrades Python to 3.12 and MNE to 1.9.0

What's Changed

• Release v2.2.0 by @matsvanes in #401
• Matsvanes patch 1 by @matsvanes in #402
• Update glm_sensor_solution.py by @matsvanes in #403
• Upgrade: Python 3.12 + MNE 1.9 by @cgohil8 in #404

Full Changelog: v2.2.0...v2.3.0

v2.2.0

Summary of changes:

• Improved FreeSurfer source recon
• Improved linear inverse modelling
• improved reports (incl. help)
• ica_label fixes
• Tutorial updates

What's Changed

• Release 2.1.0 by @matsvanes in #377
• Fixed logging by @cgohil8 in #378
• Volumetric MNE Source Reconstruction by @cgohil8 in #379
• Fixed bug in generating the source report. by @cgohil8 in #380
• EEG pipline with structurals by @cgohil8 in #384
• dask upgrade requirements by @matsvanes in #387
• Fix: don't generate a source reconstruction report page for failed runs by @cgohil8 in #391
• Tested on Nottingham OPM data by @cgohil8 in #392
• Preproc tutorials, report, ica_label, source recon improvements by @matsvanes in #395
• Docs improvements by @matsvanes in #396
• enable reading different file types by @matsvanes in #398
• fix preproc manual tutorial by @matsvanes in #399
• AQ Workshop Changes by @AJQuinn in #394
• feat: local parcel orthogonalisation by @matsvanes in #400

Full Changelog: v2.1.0...v2.2.0

v2.1.0

What's Changed

Summary

• add source recon functionality, including FreeSurfer utils, Mimimum norm methods, etc.
• add glm wrappers for the preproc config
• add OPM utils, e.g., dealing with headshape points
• add toolbox paper scripts to examples

Details

• Release v2.0.0 by @cgohil8 in #359
• fix osl>osl_ephys in docs by @matsvanes in #360
• Fix report/log directory path. by @cgohil8 in #362
• add save_polhemus_fif by @neurofractal in #364
• Fixes and Improvements for RHINO by @cgohil8 in #370
• work in progress for adding freesurfer/surface/minimum norm source recon by @matsvanes in #368
• Update example freesurfer_source_recon.py by @matsvanes in #371
• Add GLM wrappers to preprocessing by @matsvanes in #372
• Improved functions to get leadfields and LCMV weights by @cgohil8 in #374
• added toolbox paper scripts by @matsvanes in #356
• Add utils to downsample and standardise digitised headshape points by @neurofractal in #376
• change size of headshape points based on their number in coreg display by @neurofractal in #375

New Contributors

• @neurofractal made their first contribution in #364

Full Changelog: v2.0.0...v2.1.0

v2.0.0

Renamed project: osl -> osl-ephys

v1.1.0

What's Changed

• Change license to Apache 2.0
• massive update of the documentation
• improvements in glm_epochs and glm_base, particularly regarding stats and plotting
• Ability to run group analysis in run_proc_batch
• Automatic saving of each user defined key in dataset[key] (run_proc_chain/batch)
• Add random seed to preprocessing and source_recon modules.
• improve ica_label (keep ecg/eog on top) and create ica_apply
• Improve report (formatting, navigation)
• improve logs (added extra info, time stamps, random seed, ica label info, etc)
• added features for epoching source reconstructed data

Full Changelog: v0.1.0...v1.1.0

v1.0.0

First release with the new directory structure, see #320.

v0.10.0

Final release before directory restructure.

v0.9.0

What's Changed

• The maxfilter cross talk and calibration files were moved on the hbaws computers, which caused an error. We updated maxfilter file paths to resolve this.
• Updated cbu3_stage maxfiltering.
• ICA labelling updates.
• Updated batch.py, glm_epochs.py, src_report.py.
• Installation and release notes updated.
• Include READMEs in PyPI package. This fixes issues with installing the package using pip.