Adds import of new Estimation and Prediction analyses by wivern · Pull Request #299 · OHDSI/ArachneNodeAPI

wivern · 2019-03-25T16:44:38Z

Adds import of new Estimation and Prediction analyses

pavgra · 2019-04-25T18:16:48Z

+	@RequestLine("GET /prediction")
+	List<PatientLevelPredictionInfo> getPatientLevelPredictions();
+
+	@RequestLine("GET /prediction/{id}/download?packageName={package}")


The same comment as here

Totally agree, this should be reviewed and merged with new CC and Pathways imports

pavgra · 2019-04-30T13:45:02Z

    private static final String PATIENT_LEVEL_PREDICTION_RUNNER_TEMPLATE = "plp/main.r";
    private static final String COHORT_CHARACTERIZATION_RUNNER_TEMPLATE = "cc/main.r";
+    private static final String PREDICTION_RUNNER_TEMPLATE = "plp/runAnalysis.R"; //for Atlas 2.7.0+
+    private static final String NEW_ESTIMATION_RUNNER_TEMPLATE = "estimation/runAnalysis.R"; //for Atlas 2.7.0+


I would use consistent naming: both PLE and PLP have old and new versions

pavgra · 2019-04-30T13:47:12Z

+import java.io.Serializable;
+import java.util.Date;
+
+public class EstimationListItem extends BaseAtlasEntity implements Serializable {


Why not extends CommonAnalysis? - createdBy, createdDate, etc overlap

It should be both a BaseAtlasEntity to build map between entities in multiple Atlas instances and CommonAnalysis. But Java is not Scala, there no traits here.

pavgra · 2019-04-30T13:48:18Z

+
+public class ExpressionDeserializer extends JsonDeserializer<String> {
+	@Override
+	public String deserialize(JsonParser parser, DeserializationContext context) throws IOException, JsonProcessingException {


Some comment regarding logic would be very appreciated

In older Atlas versions expression was a String containing json inside, but starting from version 2.8 it becomes an object. ExpressionDeserializer is required to remain consistent w/o changing internal logic of DataNode.

pavgra · 2019-04-30T15:56:02Z

PLE list request fails:

Fails in

client ->  getEntityMapper(atlas)
   .getEntityList(client) // <-- here
   .stream().peek(en -> en.setOrigin(atlas))

pavgra · 2019-04-30T16:05:47Z

The issue is related to atlasClientPool. When I started Data Node, it had old info about an Atlas instance and instantiated AtlasClient v2.5 and then the Atlas version was refreshed to v2.7 but pool was still returning AtlasClient v2.5 (cached)

pavgra · 2019-04-30T16:09:21Z

Import should work properly with non-secure Atlas instances:

2019-04-30 12:03:54.661 ERROR 45236 --- [NodeScheduler-3] c.o.a.d.service.impl.CohortServiceImpl   : Process List Requests checking failure, Can not construct instance of com.odysseusinc.arachne.datanode.dto.atlas.AtlasUserDTO: no String-argument constructor/factory method to deserialize from String value ('')
 at [Source: java.io.BufferedReader@decee31; line: 1, column: 152] (through reference chain: java.util.ArrayList[0]->com.odysseusinc.arachne.datanode.dto.atlas.EstimationAnalysis["createdBy"]) reading GET http://api.ohdsi.org/WebAPI/estimation

pavgra · 2019-04-30T16:25:57Z

AtlasClient2_5 is instantiated for Atlas with version {"version":"2.7.2.bcbs"}. Should be AtlasClient2_7

pavgra · 2019-04-30T17:29:07Z

One more issue:

2019-04-30 13:26:50.670 ERROR 32216 --- [NodeScheduler-3] c.o.a.d.service.impl.CohortServiceImpl   : Process List Requests checking failure, No converter found capable of converting from type [com.odysseusinc.arachne.datanode.dto.atlas.ComparativeCohortAnalysis] to type [com.odysseusinc.arachne.commons.api.v1.dto.CommonEstimationDTO]

pavgra · 2019-04-30T18:11:34Z

Old Circe version is used:

Caused by: com.fasterxml.jackson.databind.exc.UnrecognizedPropertyException: Unrecognized field "PlaceOfServiceLocation" (class org.ohdsi.circe.cohortdefinition.VisitOccurrence), not marked as ignorable (13 known properties: "Gender", "VisitSourceConcept", "CorrelatedCriteria", "VisitType", "ProviderSpecialty", "CodesetId", "VisitLength", "VisitTypeExclude", "PlaceOfService", "OccurrenceEndDate", "OccurrenceStartDate", "First", "Age"])
 at [Source: java.io.StringReader@2aa3d236; line: 1, column: 71638] (through reference chain: org.ohdsi.circe.cohortdefinition.CohortExpression["CensoringCriteria"]->java.lang.Object[][5]->org.ohdsi.circe.cohortdefinition.VisitOccurrence["PlaceOfServiceLocation"])

pavgra · 2019-04-30T19:23:00Z

runAnalysis scripts suffer from the same issues which have been already resolved in similar scripts in Atlas:

Need to install packages in no-multiarch mode
Issue with results folder for PLE

Additionally, install_local doesn't work properly for Windows (the same issue still exists in Atlas).

Fixed runAnalysis scripts Fixed circe version

pavgra · 2019-04-30T20:57:28Z

Cannot import PLE which contains special chars in its name:

error save file to disk, filename=f6fd0c74-13e2-409a-aba4-e5c7dbddb02d ex=java.nio.file.InvalidPathException: Illegal char <:> at index 19: Graham replication : Comparative effectiveness of dabigatran vs warfarin for risk of stroke_target.ohdsi.sql

* New version: 1.14.0 * ARACHNE-2359. Back-merge of fix of OHDSI SQL translation for Oracle * ARACHNE-2548. Fixed IR fails in Oracle and schroot (#253) * ARACHNE-2554. Problem with cohort import from ATLAS (#264) * fixes failed test (#269) * ARACHNE-2540 - Fixed error message when external system is not available (cherry picked from commit a46468d) * ARACHNE-2569 - Fixed working with atlasClientPool (cherry picked from commit 92de367) * ARACHNE-2557. Cohort / IR execution imported from ATLAS fails (#262) (cherry picked from commit 58ac04c) * ARACHNE-2573. Unable to register at Node side [back_merge] (#277) * ARACHNE-2566. Excluded deleted ds from health check and achilles scheduler [back_merge] (#279) * Fixed ojdbc6 version * ARACHNE-2564. Added new reg form fields [back_merge] (#281) * ARACHNE-2586. Added network parameter for achilles container (#284) * ARACHNE-2600. Fixed Achilles import by specifying concrete version of used scripts (#286) * Setting to specify custom mapping of Achilles temp folder (#289) * ARACHNE-2627. Added configurable Feign timeout (#291) * Arachne 2598. Updated schema parameters for PLE and PLP (#293) * ARACHNE-2610. Caught 'logout' and 'bad credentials' auth exception (#294) * Adds Support of BQ keyfile json for authentication of EE jobs (#298) * Adds import of new Estimation and Prediction analyses (#299) * Fixes GraalVM inside Spring Boot (#304) * Issue-621. Support BIGING and NUMERIC types for Achilles report exporting (#305) * Updates used Achilles version (#306) * Implements new CC import (#302) * Arachne-ui-issue-651. Fixes issues with reports import (#310) * Back merge from 1.14 & version increment (#312) * conforms arachne-commons structure changes * Conforms arachne-commons structure changes (#317) * conforms arachne-commons structure changes * Fix Feign encoders (#314) * Improve swagger documentation (#320) * improve swagger documentation * improve swagger documentation - update and configure swagger * improve swagger documentation - document remaining API methods * Fixes failed signature validation (#326) * issue-321 - sending node token to central cause signature validation failure * create Arachne community edition build and run manual - apply review comments * Analysis submission via Datanode (#325) * Add default value for the submission.result.files.exclusions property in test config (#329) * Fixes execution engine connection properties (#330) * Utilizes Authenticator & introduces Standalone mode (#328) * Fixes Datanode shows info in Sources list inconsistent with Central (#337) * Prohibits update of published Data source name in Standalone mode (#334) * Fixes authentication filter logic (#336) * Fixes tests after Authenticator addition (#338) * Upgrade to zip4j 2.1.1 (#339) * Fixes analysis import (#340) * Back merge release 1.15.0 (#363) * ARACHNE-2554. Problem with cohort import from ATLAS (#263) * Fixed test (#267) * ARACHNE-2540 - Fixed error message when external system is not available (#265) * ARACHNE-2569 - Fixed working with atlasClientPool (#270) * ARACHNE-2557. Cohort / IR execution imported from ATLAS fails (#262) (cherry picked from commit 58ac04c) * ARACHNE-2573. Fixed registration at Node side (#276) * ARACHNE-2566. Excluded deleted DSs from health check and Achilles scheduler (#278) * ARACHNE-2564. Added new reg form fields (#280) * Fixed ojdbc6 version * ARACHNE-2586. Added network parameter for achilles container (#283) * ARACHNE-2600. Fixed Achilles import by specifying concrete version of used scripts (#285) ARACHNE-2600. Fixed Achilles import by specifying concrete version of used scripts * Setting to specify custom mapping of Achilles temp folder (#288) * ARACHNE-2627. Added configurable Feign timeout (#290) * ARACHNE-2598. Updated schema parameters for PLP and PLE (#292) * ARACHNE-2610. Replaced throwing errors to log messages (#287) * update version to 1.13.1-QA (#300) * 1.14.0-QA (#307) * Arachne-ui-issue-651. Fixes issues with reports import (#310) (cherry picked from commit 1f438df) * QA 1.15.0 (#341) * Update Authenticator dependency (#342) * Removes packrat from IR (#343) * adds sanitation for cohort files (#345) * hides Heracles and Pathways analyses from submissions (#347) * Fixes BigQuery datasource create/edit (#349) * Fix IR drivers path (#351) * Fixes validations for Impala DBMS (#353) * fixes datasource validator tests * fixes datasource validator tests * Fixes empty admin FQDN for Kerberos auth (#357) * ARACHNE-2723 IR fails on BigQuery (#358) * ARACHNE-2723 IR fails on BigQuery - pass result schema as temp schema to the SqlRender - replace usage of deprecated translateSql method with translate * ARACHNE-2723 IR fails on BigQuery (fix PR remarks) - use render instead of deprecated renderSql - add tempDatabaseSchema as default argument in method * Arachne-2723. Fixes failure on BQ. Fixes issues with Strata processing (#360) * ARACHNE-2722 Cohort (simple counts) fails on BigQuery (#361) * back-merge 1.15 * Enable Cohort counts (checkbox) by default (#364) * ARACHNE-2744 Cohort Characterization fails on BigQuery (#372) * ARACHNE-2744 Cohort Characterization fails on BigQuery - generate sql with tempSchema(add tempSchema as argument to the SqlRender::translate method * ARACHNE-2744 Cohort Characterization fails on BigQuery. fix review remarks - set tempSchema * Validate datasource name duplication before the save (#359) * Validate datasource name duplication before the save and show user friendly message if validation fails * code review comments * fixes generalized type * Code review issues * Adds New pathway (#315) * Add support for new prediction/estimation * Adds import of new Estimation and Prediction analyses * Implement new CC import * import of cohort pathway * Implement new Pathway import * Adds import of new Estimation and Prediction analyses * removes redundant methods * Implement new CC import * fixes mapper inheritance * fixes mapper inheritance * Implement new CC import * merged from latest develop * merged from latest develop * fix Feign encoders * fix Feign encoders * new pathway analysis * new pathway analysis * fixes resource path * provides running in a standalone mode * updates Pathways analysis to 1.16 * adds sanitation for cohort names * fixes after review * fix broken build (#377) * ARACHNE-2759 Errors during prod Upgrade (#378) - fix: violates foreign key constraint "fk_analysis_id" * Implements connection check while adding datasource (#366) * ARACHNE-2715 - move check functionality from enterprise * ARACHNE-2715 - refactoring of health check - add unit test * Issue 2715 no connection check for new data source - fix PR remarks -- remove heartbeat constant -- remove wrong ee host from application-base * Issue 2715 no connection check for new data source - call autodetectFields for any data-node-mode.(it used to be only for Network) * Issue 2715 no connection check for new data source - fix after merge - fix unit test * ARACHNE-2759 Errors during prod Upgrade (#381) - fix script for empty DB * Support heracles analyses (#382) * ARACHNE-2708 HERACLES * Heracles Analysis Support * Heracles Analysis Support * Heracles Analysis Support - delete unpacked files * Heracles Analysis Support - self-review code tweaks * replace broken IncidenceRate_v0.0.1.zip with the fresh version from the IR Repo (#384) * Update vulnerable and some other dependencies (#386) * ARACHNE - update some dependencies versions * ARACHNE-2719 Update AD/LDAP user import routines to work with Authen… (#385) * ARACHNE-2719 Update AD/LDAP user import routines to work with Authenticator - upgrade version of authenticator * ARACHNE-2719 Update AD/LDAP user import routines to work with Authenticator. fix PR remarks - add check to avoid NPE * ARACHNE-2719 Update AD/LDAP user import routines to work with Authenticator. fix PR remarks - UserInfo signature was changed * ARACHNE-2719 Update AD/LDAP user import routines to work with Authenticator. fix PR remarks - UserInfo signature was changed * ARACHNE-2719 Update AD/LDAP user import routines to work with Authenticator. fix PR remarks - UserInfo signature was changed * Analysis import (#387) generate analysis description field during import * ARACHNE-2719 Update AD/LDAP user import routines to work with Authen… (#389) * ARACHNE-2719 Update AD/LDAP user import routines to work with Authenticator. fix PR remarks - fix for creating data source in stand-alone mode * RACHNE-2696 files naming convention, fix PR remarks - set notNull token field * ARACHNE-2719 Update AD/LDAP user import routines to work with Authenticator. fix PR remarks - fix for creating data source in stand-alone mode * RACHNE-2696 files naming convention, fix PR remarks - remove unused constant * ARACHNE-2719 Update AD/LDAP user import routines to work with Authenticator. fix PR remarks - make datanode.token column nullable * Update pom.xml (#390) remove http://repo.maven.apache.org/maven2 http is not longer supported by maven central. Default repo point to the correct https version https://stackoverflow.com/a/59764670/1167673 * Arachne 2696 files naming convention (#388) * import description - refactoring * import description - meta files * generate analysis description field during import * generate analysis description field during import * generate analysis description field during import * generate analysis description field during import * generate analysis description field during import * RACHNE-2696 files naming convention - use AnalysesArchiveUtils.getArchiveFileName method to generate zip file name * RACHNE-2696 files naming convention - fix merge Co-authored-by: Anton Gackovka <anton.gackovka@odysseusinc.com> Co-authored-by: Vitaly Koulakov <vitaly.koulakov@gmail.com> Co-authored-by: anastasiia klochkova <38942654+aklochkova@users.noreply.github.com> Co-authored-by: OdysseusBot <34305057+OdysseusBot@users.noreply.github.com> Co-authored-by: mpozhidaeva <31308645+mpozhidaeva@users.noreply.github.com> Co-authored-by: Pavel Grafkin <pavgra@gmail.com> Co-authored-by: Alex Cumarav <7705583+acumarav@users.noreply.github.com>

* update version to 1.13.1-QA (#300) * 1.14.0-QA (#307) * Arachne-ui-issue-651. Fixes issues with reports import (#310) (cherry picked from commit 1f438df) * QA 1.15.0 (#341) * Update Authenticator dependency (#342) * Removes packrat from IR (#343) * adds sanitation for cohort files (#345) * hides Heracles and Pathways analyses from submissions (#347) * Fixes BigQuery datasource create/edit (#349) * Fix IR drivers path (#351) * Fixes validations for Impala DBMS (#353) * fixes datasource validator tests * fixes datasource validator tests * Fixes empty admin FQDN for Kerberos auth (#357) * ARACHNE-2723 IR fails on BigQuery (#358) * ARACHNE-2723 IR fails on BigQuery - pass result schema as temp schema to the SqlRender - replace usage of deprecated translateSql method with translate * ARACHNE-2723 IR fails on BigQuery (fix PR remarks) - use render instead of deprecated renderSql - add tempDatabaseSchema as default argument in method * Arachne-2723. Fixes failure on BQ. Fixes issues with Strata processing (#360) * ARACHNE-2722 Cohort (simple counts) fails on BigQuery (#361) * Backmerge of fix for DataNode create in Standalone mode (#367) * fixes datanode creation in standalone mode (cherry picked from commit b1f335d) * tests added (cherry picked from commit f0b3932) * improves standalone test (cherry picked from commit 44a73c3) * removes extra settings requirements (cherry picked from commit 1a7af48) * removes unused drivers for tests (cherry picked from commit 1810062) * fixes after review (cherry picked from commit 47b1df0) * Hotfix UUID migration qa backmerge (#369) * migration should not run in standalone mode * fixes after review * ARACHNE-2744 Cohort Characterization fails on BigQuery (#372) (#373) * ARACHNE-2744 Cohort Characterization fails on BigQuery - generate sql with tempSchema(add tempSchema as argument to the SqlRender::translate method * ARACHNE-2744 Cohort Characterization fails on BigQuery. fix review remarks - set tempSchema * ARACHNE-2729 Add IAP auth support into Standalone Node (#374) * ARACHNE-2729 Add IAP auth support into Standalone Node * ARACHNE-2729 Add IAP auth support into Standalone Node - create user by IAP token * ARACHNE-2729 Add IAP auth support into Standalone Node - add AuthorizationMode * ARACHNE-2729 Add IAP auth support into Standalone Node - clean up code * ARACHNE-2729 Add IAP auth support into Standalone Node - Authenticator class was moved in other pkg * New version: 1.15.1-QA * ARACHNE-2729 Add IAP auth support into Standalone Node - fix pr remarks. - code convention * ARACHNE-2729 Add IAP auth support into Standalone Node - fix unit tests * set 0.0.2-QA version of Authenticator (#376) * Qa 1.16.0 (#391) * New version: 1.14.0 * ARACHNE-2359. Back-merge of fix of OHDSI SQL translation for Oracle * ARACHNE-2548. Fixed IR fails in Oracle and schroot (#253) * ARACHNE-2554. Problem with cohort import from ATLAS (#264) * fixes failed test (#269) * ARACHNE-2540 - Fixed error message when external system is not available (cherry picked from commit a46468d) * ARACHNE-2569 - Fixed working with atlasClientPool (cherry picked from commit 92de367) * ARACHNE-2557. Cohort / IR execution imported from ATLAS fails (#262) (cherry picked from commit 58ac04c) * ARACHNE-2573. Unable to register at Node side [back_merge] (#277) * ARACHNE-2566. Excluded deleted ds from health check and achilles scheduler [back_merge] (#279) * Fixed ojdbc6 version * ARACHNE-2564. Added new reg form fields [back_merge] (#281) * ARACHNE-2586. Added network parameter for achilles container (#284) * ARACHNE-2600. Fixed Achilles import by specifying concrete version of used scripts (#286) * Setting to specify custom mapping of Achilles temp folder (#289) * ARACHNE-2627. Added configurable Feign timeout (#291) * Arachne 2598. Updated schema parameters for PLE and PLP (#293) * ARACHNE-2610. Caught 'logout' and 'bad credentials' auth exception (#294) * Adds Support of BQ keyfile json for authentication of EE jobs (#298) * Adds import of new Estimation and Prediction analyses (#299) * Fixes GraalVM inside Spring Boot (#304) * Issue-621. Support BIGING and NUMERIC types for Achilles report exporting (#305) * Updates used Achilles version (#306) * Implements new CC import (#302) * Arachne-ui-issue-651. Fixes issues with reports import (#310) * Back merge from 1.14 & version increment (#312) * conforms arachne-commons structure changes * Conforms arachne-commons structure changes (#317) * conforms arachne-commons structure changes * Fix Feign encoders (#314) * Improve swagger documentation (#320) * improve swagger documentation * improve swagger documentation - update and configure swagger * improve swagger documentation - document remaining API methods * Fixes failed signature validation (#326) * issue-321 - sending node token to central cause signature validation failure * create Arachne community edition build and run manual - apply review comments * Analysis submission via Datanode (#325) * Add default value for the submission.result.files.exclusions property in test config (#329) * Fixes execution engine connection properties (#330) * Utilizes Authenticator & introduces Standalone mode (#328) * Fixes Datanode shows info in Sources list inconsistent with Central (#337) * Prohibits update of published Data source name in Standalone mode (#334) * Fixes authentication filter logic (#336) * Fixes tests after Authenticator addition (#338) * Upgrade to zip4j 2.1.1 (#339) * Fixes analysis import (#340) * Back merge release 1.15.0 (#363) * ARACHNE-2554. Problem with cohort import from ATLAS (#263) * Fixed test (#267) * ARACHNE-2540 - Fixed error message when external system is not available (#265) * ARACHNE-2569 - Fixed working with atlasClientPool (#270) * ARACHNE-2557. Cohort / IR execution imported from ATLAS fails (#262) (cherry picked from commit 58ac04c) * ARACHNE-2573. Fixed registration at Node side (#276) * ARACHNE-2566. Excluded deleted DSs from health check and Achilles scheduler (#278) * ARACHNE-2564. Added new reg form fields (#280) * Fixed ojdbc6 version * ARACHNE-2586. Added network parameter for achilles container (#283) * ARACHNE-2600. Fixed Achilles import by specifying concrete version of used scripts (#285) ARACHNE-2600. Fixed Achilles import by specifying concrete version of used scripts * Setting to specify custom mapping of Achilles temp folder (#288) * ARACHNE-2627. Added configurable Feign timeout (#290) * ARACHNE-2598. Updated schema parameters for PLP and PLE (#292) * ARACHNE-2610. Replaced throwing errors to log messages (#287) * update version to 1.13.1-QA (#300) * 1.14.0-QA (#307) * Arachne-ui-issue-651. Fixes issues with reports import (#310) (cherry picked from commit 1f438df) * QA 1.15.0 (#341) * Update Authenticator dependency (#342) * Removes packrat from IR (#343) * adds sanitation for cohort files (#345) * hides Heracles and Pathways analyses from submissions (#347) * Fixes BigQuery datasource create/edit (#349) * Fix IR drivers path (#351) * Fixes validations for Impala DBMS (#353) * fixes datasource validator tests * fixes datasource validator tests * Fixes empty admin FQDN for Kerberos auth (#357) * ARACHNE-2723 IR fails on BigQuery (#358) * ARACHNE-2723 IR fails on BigQuery - pass result schema as temp schema to the SqlRender - replace usage of deprecated translateSql method with translate * ARACHNE-2723 IR fails on BigQuery (fix PR remarks) - use render instead of deprecated renderSql - add tempDatabaseSchema as default argument in method * Arachne-2723. Fixes failure on BQ. Fixes issues with Strata processing (#360) * ARACHNE-2722 Cohort (simple counts) fails on BigQuery (#361) * back-merge 1.15 * Enable Cohort counts (checkbox) by default (#364) * ARACHNE-2744 Cohort Characterization fails on BigQuery (#372) * ARACHNE-2744 Cohort Characterization fails on BigQuery - generate sql with tempSchema(add tempSchema as argument to the SqlRender::translate method * ARACHNE-2744 Cohort Characterization fails on BigQuery. fix review remarks - set tempSchema * Validate datasource name duplication before the save (#359) * Validate datasource name duplication before the save and show user friendly message if validation fails * code review comments * fixes generalized type * Code review issues * Adds New pathway (#315) * Add support for new prediction/estimation * Adds import of new Estimation and Prediction analyses * Implement new CC import * import of cohort pathway * Implement new Pathway import * Adds import of new Estimation and Prediction analyses * removes redundant methods * Implement new CC import * fixes mapper inheritance * fixes mapper inheritance * Implement new CC import * merged from latest develop * merged from latest develop * fix Feign encoders * fix Feign encoders * new pathway analysis * new pathway analysis * fixes resource path * provides running in a standalone mode * updates Pathways analysis to 1.16 * adds sanitation for cohort names * fixes after review * fix broken build (#377) * ARACHNE-2759 Errors during prod Upgrade (#378) - fix: violates foreign key constraint "fk_analysis_id" * Implements connection check while adding datasource (#366) * ARACHNE-2715 - move check functionality from enterprise * ARACHNE-2715 - refactoring of health check - add unit test * Issue 2715 no connection check for new data source - fix PR remarks -- remove heartbeat constant -- remove wrong ee host from application-base * Issue 2715 no connection check for new data source - call autodetectFields for any data-node-mode.(it used to be only for Network) * Issue 2715 no connection check for new data source - fix after merge - fix unit test * ARACHNE-2759 Errors during prod Upgrade (#381) - fix script for empty DB * Support heracles analyses (#382) * ARACHNE-2708 HERACLES * Heracles Analysis Support * Heracles Analysis Support * Heracles Analysis Support - delete unpacked files * Heracles Analysis Support - self-review code tweaks * replace broken IncidenceRate_v0.0.1.zip with the fresh version from the IR Repo (#384) * Update vulnerable and some other dependencies (#386) * ARACHNE - update some dependencies versions * ARACHNE-2719 Update AD/LDAP user import routines to work with Authen… (#385) * ARACHNE-2719 Update AD/LDAP user import routines to work with Authenticator - upgrade version of authenticator * ARACHNE-2719 Update AD/LDAP user import routines to work with Authenticator. fix PR remarks - add check to avoid NPE * ARACHNE-2719 Update AD/LDAP user import routines to work with Authenticator. fix PR remarks - UserInfo signature was changed * ARACHNE-2719 Update AD/LDAP user import routines to work with Authenticator. fix PR remarks - UserInfo signature was changed * ARACHNE-2719 Update AD/LDAP user import routines to work with Authenticator. fix PR remarks - UserInfo signature was changed * Analysis import (#387) generate analysis description field during import * ARACHNE-2719 Update AD/LDAP user import routines to work with Authen… (#389) * ARACHNE-2719 Update AD/LDAP user import routines to work with Authenticator. fix PR remarks - fix for creating data source in stand-alone mode * RACHNE-2696 files naming convention, fix PR remarks - set notNull token field * ARACHNE-2719 Update AD/LDAP user import routines to work with Authenticator. fix PR remarks - fix for creating data source in stand-alone mode * RACHNE-2696 files naming convention, fix PR remarks - remove unused constant * ARACHNE-2719 Update AD/LDAP user import routines to work with Authenticator. fix PR remarks - make datanode.token column nullable * Update pom.xml (#390) remove http://repo.maven.apache.org/maven2 http is not longer supported by maven central. Default repo point to the correct https version https://stackoverflow.com/a/59764670/1167673 * Arachne 2696 files naming convention (#388) * import description - refactoring * import description - meta files * generate analysis description field during import * generate analysis description field during import * generate analysis description field during import * generate analysis description field during import * generate analysis description field during import * RACHNE-2696 files naming convention - use AnalysesArchiveUtils.getArchiveFileName method to generate zip file name * RACHNE-2696 files naming convention - fix merge Co-authored-by: Anton Gackovka <anton.gackovka@odysseusinc.com> Co-authored-by: Vitaly Koulakov <vitaly.koulakov@gmail.com> Co-authored-by: anastasiia klochkova <38942654+aklochkova@users.noreply.github.com> Co-authored-by: OdysseusBot <34305057+OdysseusBot@users.noreply.github.com> Co-authored-by: mpozhidaeva <31308645+mpozhidaeva@users.noreply.github.com> Co-authored-by: Pavel Grafkin <pavgra@gmail.com> Co-authored-by: Alex Cumarav <7705583+acumarav@users.noreply.github.com> * Qa 1.16.0 fix (#395) * ARACHNE-2729 Add IAP auth support into Standalone Node (#392) * set standard authentication mode by default(ARACHNE-2729) (#394) Co-authored-by: Alex Cumarav <tsuria@users.noreply.github.com> Co-authored-by: Alex Cumarav <7705583+acumarav@users.noreply.github.com> Co-authored-by: Konstantin Iaroshovets <konstjar@users.noreply.github.com> Co-authored-by: molodkov yaroslav <yaroslav.molodkov@odysseusinc.com> Co-authored-by: Anton Gackovka <anton.gackovka@odysseusinc.com> Co-authored-by: anastasiia klochkova <38942654+aklochkova@users.noreply.github.com> Co-authored-by: OdysseusBot <34305057+OdysseusBot@users.noreply.github.com> Co-authored-by: mpozhidaeva <31308645+mpozhidaeva@users.noreply.github.com> Co-authored-by: Pavel Grafkin <pavgra@gmail.com>

wivern added 2 commits March 25, 2019 14:21

Add support for new prediction/estimation

2ce727c

Adds import of new Estimation and Prediction analyses

0a21d63

wivern requested a review from pavgra March 25, 2019 16:44

pavgra suggested changes Apr 25, 2019

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wivern added 4 commits April 26, 2019 19:06

Adds import of new Estimation and Prediction analyses

cd72d8b

removes redundant methods

6293cca

fixes mapper inheritance

9058f5b

fixes mapper inheritance

df508dd

pavgra suggested changes Apr 30, 2019

View reviewed changes

fixes inconsistent naming and comment

fa8e653

fixes import for Atlas 2.7

cbea584

pavgra added 3 commits April 30, 2019 15:43

Fixed converters

ec3b294

Fixed runAnalysis scripts Fixed circe version

Added Data source name parameter to Analysis Request

842d9d3

Fixed hardcoded Data source name for PLE

a5e00e0

pavgra approved these changes Apr 30, 2019

View reviewed changes

pavgra merged commit 681f4d5 into develop Apr 30, 2019

acumarav deleted the new_prediction_estimation branch May 29, 2020 13:33

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pavgra commented Apr 30, 2019 •

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