undefined option: --detect_adapter_for_pe

[ereverman]

Hi,

I've used this code in the past without issue, but now, the --detect_adapter_for_pe is throwing an error. Here is the code chunk:

activate_conda_environment ${PROJECT} fastp

fastp -i ${DATA_RAW}/${sample}R1.fastq.gz
-I ${DATA_RAW}/${sample}R2.fastq.gz
-o ${DATA_FILT}/${sample}.R1.filt.fastq.gz
-O ${DATA_FILT}/${sample}.R2.filt.fastq.gz
-h ${FASTP_REPORTS_DIR}/${sample}.fastp.report.html
-j ${FASTP_REPORTS_DIR}/${sample}.fastp.report.json
-w ${N_THREADS}
--detect_adapter_for_pe
--correction
--cut_by_quality3
--cut_window_size 5
--cut_mean_quality 30
--overrepresentation_analysis || { echo "fastp failed" ; exit 1; }
source deactivate

Here is the error message:
undefined option: --detect_adapter_for_pe

Thanks

[sfchen]

You may be using the older version.

What's the version number?

[ereverman]

I am using version 0.14.1-0. How do I update to the current version?

[sfchen]

You should download the new version, or update using conda

[ereverman]

When I try updating with conda or reinstalling, the version number doesn't change.